Evidence map›Paper›PMID 26130804›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

GABA-mediated repulsive coupling between circadian clock neurons in the SCN encodes seasonal time.

Jihwan Myung, Sungho Hong, Daniel DeWoskin, Erik De Schutter, Daniel B Forger, Toru Takumi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 2 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 2 syntheses or guidelines pooled it, 176 citations in OpenAlex.

  1. Systematic review of drugs that modify the circadian system's phase-shifting responses to light exposure.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2022
    Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Circadian Behavioral and Bioluminescence Rhythms in theJournal of biological rhythms · 2026
    Article
  6. Article
  7. Review
  8. An order parameter for synchronisation of angular velocities.The European physical journal. Special topics · 2026
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The seasons within: a theoretical perspective on photoperiodic entrainment and encoding.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  18. On the origin and evolution of the dual oscillator model underlying the photoperiodic clockwork in the suprachiasmatic nucleus.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  19. One seasonal clock fits all?Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jihwan MyungRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan; Graduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan;ORCID http://orcid.org/0000-0002-2529-8013
Sungho HongComputational Neuroscience Unit, Okinawa Institute of Science and Technology, Onna, Okinawa 904-0495, Japan;
Daniel DeWoskinDepartment of Mathematics, University of Michigan, Ann Arbor, MI 48109;
Erik De SchutterComputational Neuroscience Unit, Okinawa Institute of Science and Technology, Onna, Okinawa 904-0495, Japan;
Daniel B ForgerDepartment of Mathematics, University of Michigan, Ann Arbor, MI 48109; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109;
Toru TakumiRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan; Graduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan; Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102-0076, Japan toru.takumi@riken.jp.
Hiroshima University · JPOkinawa Institute of Science and Technology Graduate University · JPUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian suprachiasmatic nucleus (SCN) forms not only the master circadian clock but also a seasonal clock. This neural network of ∼10,000 circadian oscillators encodes season-dependent day-length changes through a largely unknown mechanism. We show that region-intrinsic changes in the SCN fine-tune the degree of network synchrony and reorganize the phase relationship among circadian oscillators to represent day length. We measure oscillations of the clock gene Bmal1, at single-cell and regional levels in cultured SCN explanted from animals raised under short or long days. Coupling estimation using the Kuramoto framework reveals that the network has couplings that can be both phase-attractive (synchronizing) and -repulsive (desynchronizing). The phase gap between the dorsal and ventral regions increases and the overall period of the SCN shortens with longer day length. We find that one of the underlying physiological mechanisms is the modulation of the intracellular chloride concentration, which can adjust the strength and polarity of the ionotropic GABAA-mediated synaptic input. We show that increasing day-length changes the pattern of chloride transporter expression, yielding more excitatory GABA synaptic input, and that blocking GABAA signaling or the chloride transporter disrupts the unique phase and period organization induced by the day length. We test the consequences of this tunable GABA coupling in the context of excitation-inhibition balance through detailed realistic modeling. These results indicate that the network encoding of seasonal time is controlled by modulation of intracellular chloride, which determines the phase relationship among and period difference between the dorsal and ventral SCN.

Indexed as

SeasonsAnimalsChloridesCircadian ClocksCircadian RhythmComputer Simulationgamma-Aminobutyric AcidIntracellular SpaceMice, Inbred C57BLMice, TransgenicModels, NeurologicalNerve NetNeuronsReceptors, GABA-ASuprachiasmatic NucleusTime FactorsChloridesgamma-Aminobutyric AcidReceptors, GABA-Achlorideday-length encodingGABArepulsive couplingSCN

Identifiers

PMID26130804
PMCPMC4517217
OpenAlexW2107306733

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.