Evidence map›Paper›PMID 26130484›Full record

ArticleEuropean journal of human genetics : EJHG2016

Novel mutations in PAX6, OTX2 and NDP in anophthalmia, microphthalmia and coloboma.

Brett Deml, Linda M Reis, Emmanuelle Lemyre, Robin D Clark, Ariana Kariminejad, Elena V Semina

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Genetic Analysis ofBiomedicines · 2025
    Article
  7. Itpka depletion implicates defects in anterior neural development ofFrontiers in cell and developmental biology · 2025
    Article
  8. Article
  9. Non-syndromic OTX2-associated pattern dystrophy: a 10-year multimodal imaging study.Documenta ophthalmologica. Advances in ophthalmology · 2024
    Article
  10. Article
  11. Prdm15 acts upstream of Wnt4 signaling in anterior neural development ofFrontiers in cell and developmental biology · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Spectrum of Mutations inFrontiers in genetics · 2022
    Review
  18. Article
  19. The Ribosomal Protein L5 Functions DuringFrontiers in cell and developmental biology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Brett DemlDepartment of Pediatrics and Children's Research Institute, Medical College of Wisconsin, Milwaukee, WI, USA.
Linda M ReisDepartment of Pediatrics and Children's Research Institute, Medical College of Wisconsin, Milwaukee, WI, USA.
Emmanuelle LemyreService de Génétique médicale, CHU Ste-Justine, Département de Pédiatrie, Université de Montréal, Montréal, Canada.
Robin D ClarkDivision of Medical Genetics, Department of Pediatrics, Loma Linda University Children's Hospital, Loma Linda, CA 92354.
Ariana KariminejadKariminejad-Najmabadi Pathology and Genetics Center, Tehran, Iran.
Elena V SeminaDepartment of Pediatrics and Children's Research Institute, Medical College of Wisconsin, Milwaukee, WI, USA.
Medical College of Wisconsin · USLoma Linda University Children's Hospital · USUniversité de Montréal · CA

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR031973 · NCRR · MEDICAL COLLEGE OF WISCONSIN · PI SHAKER, REZA NONE · 2010 to 2011
$7.9M
Molecular Mechanisms of Axenfeld-Rieger SyndromeR01EY015518 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI Elena V Semina · 2005 to 2026
$5.6M
Rresearch Training Program in Vision ScienceT32EY014537 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI Elena V Semina · 2002 to 2026
$4.2M
Molecular characterization of congenital cataractR21EY023011 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI SEMINA, ELENA V · 2013 to 2014
$409k
NCRR NIH HHS 1UL1RR031973NCRR NIH HHS UL1 RR031973NEI NIH HHS R01 EY015518NEI NIH HHS R01EY015518NEI NIH HHS R21 EY023011NEI NIH HHS T32 EY014537
6 · The paper itself

Abstract

Anophthalmia and microphthalmia (A/M) are developmental ocular malformations defined as the complete absence or reduction in size of the eye. A/M is a highly heterogeneous disorder with SOX2 and FOXE3 playing major roles in dominant and recessive pedigrees, respectively; however, the majority of cases lack a genetic etiology. We analyzed 28 probands affected with A/M spectrum (without mutations in SOX2/FOXE3) by whole-exome sequencing. Analysis of 83 known A/M factors identified pathogenic/likely pathogenic variants in PAX6, OTX2 and NDP in three patients. A novel heterozygous likely pathogenic variant in PAX6, c.767T>C, p.(Val256Ala), was identified in two brothers with bilateral microphthalmia, coloboma, primary aphakia, iris hypoplasia, sclerocornea and congenital glaucoma; the unaffected mother appears to be a mosaic carrier. While A/M has been reported as a rare feature, this is the first report of congenital primary aphakia in association with PAX6 and the identified allele represents the first variant in the PAX6 homeodomain to be associated with A/M. A novel pathogenic variant in OTX2, c.651delC, p.(Thr218Hisfs*76), in a patient with syndromic bilateral anophthalmia and a hemizygous pathogenic variant in NDP, c.293 C>T, p.(Pro98Leu), in two brothers with isolated bilateral microphthalmia and sclerocornea were also identified. Pathogenic/likely pathogenic variants were not discovered in the 25 remaining A/M cases. This study underscores the utility of whole-exome sequencing for identification of causative mutations in highly variable ocular phenotypes as well as the extreme genetic heterogeneity of A/M conditions.

Indexed as

AdolescentAdultAnophthalmosChildColobomaExomeEye ProteinsFemaleHeterozygoteHumansMaleMicrophthalmosMutationNerve Tissue ProteinsOtx Transcription FactorsPAX6 Transcription FactorEye ProteinsNDP protein, humanNerve Tissue ProteinsOTX2 protein, humanOtx Transcription FactorsPAX6 protein, humanPAX6 Transcription Factor

Identifiers

PMID26130484
PMCPMC4929874
OpenAlexW1616141624

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.