Evidence map›Paper›PMID 26130388›Full record

ArticleScientific reports2015

Molecular evolution of haemagglutinin (H) gene in measles virus.

Hirokazu Kimura, Mika Saitoh, Miho Kobayashi, Haruyuki Ishii, Takeshi Saraya, Daisuke Kurai, Hiroyuki Tsukagoshi, Komei Shirabe, Atsuyoshi Nishina, Kunihisa Kozawa and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. History of the measles epidemics in Colombia: an incomplete countBiomedica : revista del Instituto Nacional de Salud · 2025
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  8. Evolutionary trajectory of fishEcology and evolution · 2020
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  16. Molecular Evolution of theFrontiers in microbiology · 2017
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  17. Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Hirokazu KimuraInfectious Disease Surveillance Center, National Institute of Infectious Diseases, Musashimurayama-shi, Tokyo 208-0011, Japan.
Mika SaitohGunma Prefectural Institute of Public Health and Environmental Sciences, Maebashi-shi, Gunma 371-0052, Japan.
Miho KobayashiGunma Prefectural Institute of Public Health and Environmental Sciences, Maebashi-shi, Gunma 371-0052, Japan.
Haruyuki IshiiDepartment of Respiratory Medicine, Kyorin University, School of Medicine, Mitaka-shi, Tokyo 181-0004, Japan.
Takeshi SarayaDepartment of Respiratory Medicine, Kyorin University, School of Medicine, Mitaka-shi, Tokyo 181-0004, Japan.
Daisuke KuraiDepartment of Respiratory Medicine, Kyorin University, School of Medicine, Mitaka-shi, Tokyo 181-0004, Japan.
Hiroyuki TsukagoshiGunma Prefectural Institute of Public Health and Environmental Sciences, Maebashi-shi, Gunma 371-0052, Japan.
Komei ShirabeYamaguchi Prefectural Institute of Public Health and Environment, Yamaguchi-shi, Yamaguchi 753-0821, Japan.
Atsuyoshi NishinaCollege of Science and Technology, Nihon University, Chiyoda-ku, Tokyo 101-8308, Japan.
Kunihisa KozawaGunma Prefectural Institute of Public Health and Environmental Sciences, Maebashi-shi, Gunma 371-0052, Japan.
Makoto KurodaPathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama-shi, Tokyo 208-0011, Japan.
Fumihiko TakeuchiPathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama-shi, Tokyo 208-0011, Japan.
Tsuyoshi SekizukaPathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama-shi, Tokyo 208-0011, Japan.
Hisanori MinakamiDepartment of Obstetrics, Hokkaido University Graduate School of Medicine, Sapporo-shi, Hokkaido 060-8638, Japan.
Akihide RyoDepartment of Molecular Biodefence Research, Yokohama City University Graduate School of Medicine, Yokohama-shi, Kanagawa 236-0004, Japan.
Makoto TakedaDepartment of Virology III, National Institute of Infectious Diseases, Musashimurayama-shi, Tokyo 208-0011, Japan.
Gunma Prefectural Institute of Public Health and Environmental Sciences · JPNational Institute of Infectious Diseases · JPKyorin University · JPYokohama City University · JPHokkaido University · JPNihon University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We studied the molecular evolution of the haemagglutinin (H) gene (full length) in all genotypes (24 genotypes, 297 strains) of measles virus (MeV). The gene's evolutionary timescale was estimated by the Bayesian Markov chain Monte Carlo (MCMC) method. We also analysed positive selection sites. The MCMC tree indicated that the MeV H gene diverged from the rinderpest virus (same genus) about 250 years ago and that 24 MeV genotypes formed 3 lineages dating back to a 1915 ancestor (95% highest posterior density [HPD] 1882-1941) with relatively rapid evolution (mean rate: 9.02 × 10(-4) substitutions/site/year). The 3 lineages diverged in 1915 (lineage 1, 95% HPD 1882-1941), 1954 (lineage 2, 95% HPD 1937-1969), and 1940 (lineage 3, 95% HPD 1927-1952). These 24 genotypes may have diverged and emerged between the 1940s and 1990 s. Selective pressure analysis identified many negative selection sites on the H protein but only a few positive selection sites, suggesting strongly operated structural and/or functional constraint of changes on the H protein. Based on the molecular evolution of H gene, an ancestor MeV of the 24 genotypes emerged about 100 years ago and the structure of H protein has been well conserved.

Indexed as

Evolution, MolecularGenes, ViralBayes TheoremGenotypeHemagglutinins, ViralLikelihood FunctionsMarkov ChainsMeasles virusModels, MolecularMonte Carlo MethodPhylogenyhemagglutinin protein G, measles virusHemagglutinins, Viral

Identifiers

PMID26130388
PMCPMC4486977
OpenAlexW854301350

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.