Evidence map›Paper›PMID 26129753›Full record

Observational studyClinical infectious diseases : an official publication of the Infectious Diseases Society of America2015

Mitochondrial DNA Haplogroups and Neurocognitive Impairment During HIV Infection.

Todd Hulgan, David C Samuels, William Bush, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Donald R Franklin, Peter Straub, Deborah G Murdock, David B Clifford and 10 more

Abstract readObservational Study
In one paragraph

Observational study in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Observational
  9. Article
  10. Heme oxygenase-1 promoter (GT)Neurology(R) neuroimmunology & neuroinflammation · 2020
    Article
  11. Observational
  12. Article
  13. Observational
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2017
    Observational
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Todd HulganVanderbilt University, Nashville, Tennessee.
David C SamuelsVanderbilt University, Nashville, Tennessee.
William BushVanderbilt University, Nashville, Tennessee.
Ronald J EllisUniversity of California-San Diego, California.
Scott L LetendreUniversity of California-San Diego, California.
Robert K HeatonUniversity of California-San Diego, California.
Donald R FranklinUniversity of California-San Diego, California.
Peter StraubVanderbilt University, Nashville, Tennessee.
Deborah G MurdockVanderbilt University, Nashville, Tennessee.
David B CliffordWashington University, St. Louis, Missouri.
Ann C CollierUniversity of Washington, Seattle.
Benjamin B GelmanUniversity of Texas Medical Branch, Galveston.
Christina M MarraUniversity of Washington, Seattle.
Justin C McArthurJohns Hopkins University, Baltimore, Maryland.
J Allen McCutchanUniversity of California-San Diego, California.
Susan MorgelloIcahn School of Medicine at Mount Sinai, New York, New York.
David M SimpsonIcahn School of Medicine at Mount Sinai, New York, New York.
Igor GrantUniversity of California-San Diego, California.
Asha R KallianpurCleveland Clinic Foundation/Lerner Research Institute and Cleveland Clinic Lerner College of Medicine, Ohio.
CHARTER Group

Funding

STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jennifer E Iudicello · 2001 to 2026
$50.4M
Age related determinants of HAND: A 12 year follow-up of CHARTER participantsR01MH107345 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HEATON, ROBERT KERNACHAN, LETENDRE, SCOTT L · 2015 to 2021
$7.9M
Iron and Mitochondrial Genomics in Neuro-inflammation and HAND: A CHARTER StudyR01MH095621 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HULGAN, TODD M, KALLIANPUR, ASHA R · 2011 to 2015
$3.1M
Midcareer Investigator Award in Patient-Oriented NeuroAIDS ResearchK24MH097673 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LETENDRE, SCOTT L · 2013 to 2017
$917k
CNS HIV ANTI-RETROVIRAL THERAPY EFFECTS RESEARCH /CHARTER/ -278022005-278022005N01MH022005 · NIMH · UNIVERSITY OF CA -SAN DIEGO · PI GRANT, IGOR · 2003 to 2006
–
NIMH NIH HHS HHSN271201000030CNIMH NIH HHS HHSN271201000036CNIMH NIH HHS K24 MH097673NIMH NIH HHS N01 MH022005NIMH NIH HHS R01 MH095621NIMH NIH HHS R01 MH107345PHS HHS 271201000030CPHS HHS 271201000036C
6 · The paper itself

Abstract

backgroundNeurocognitive impairment (NCI) remains an important complication in persons infected with human immunodeficiency virus (HIV). Ancestry-related mitochondrial DNA (mtDNA) haplogroups have been associated with outcomes of HIV infection and combination antiretroviral therapy (CART), and with neurodegenerative diseases. We hypothesize that mtDNA haplogroups are associated with NCI in HIV-infected adults and performed a genetic association study in the CNS HIV Antiretroviral Therapy Effects Research (CHARTER) cohort.

methodsCHARTER is an observational study of ambulatory HIV-infected adults. Haplogroups were assigned using mtDNA sequence, and principal components were derived from ancestry-informative nuclear DNA variants. Outcomes were cross-sectional global deficit score (GDS) as a continuous measure, GDS impairment (GDS ≥ 0.50), and HIV-associated neurocognitive disorder (HAND) using international criteria. Multivariable models were adjusted for comorbidity status (incidental vs contributing), current CART, plasma HIV RNA, reading ability, and CD4 cell nadir.

resultsHaplogroups were available from 1027 persons; median age 43 years, median CD4 nadir 178 cells/mm(3), 72% on CART, and 46% with HAND. The 102 (9.9%) persons of genetically determined admixed Hispanic ancestry had more impairment by GDS or HAND than persons of European or African ancestry (P < .001 for all). In multivariate models including persons of admixed Hispanic ancestry, those with haplogroup B had lower GDS (β = -0.34; P = .008) and less GDS impairment (odds ratio = 0.16; 95% confidence interval, .04, .63; P = .009) than other haplogroups. There were no significant haplogroup associations among persons of European or African ancestry.

conclusionsIn these mostly CART-treated persons, mtDNA haplogroup B was associated with less NCI among persons of genetically determined Hispanic ancestry. mtDNA variation may represent an ancestry-specific factor influencing NCI in HIV-infected persons.

Indexed as

HaplotypesAdolescentAdultAgedAIDS Dementia ComplexCross-Sectional StudiesDNA, MitochondrialFemaleGenetic Association StudiesHispanic or LatinoHIV InfectionsHumansMaleMiddle AgedProspective StudiesYoung AdultDNA, MitochondrialAIDScognitive disordersDNA, mitochondrialHIV

Identifiers

PMID26129753
PMCPMC4599391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.