Evidence map›Paper›PMID 26126849›Full record

ArticlemBio2015

A Pterin-Dependent Signaling Pathway Regulates a Dual-Function Diguanylate Cyclase-Phosphodiesterase Controlling Surface Attachment in Agrobacterium tumefaciens.

Nathan Feirer, Jing Xu, Kylie D Allen, Benjamin J Koestler, Eric L Bruger, Christopher M Waters, Robert H White, Clay Fuqua

Open access · goldAbstract read
In one paragraph

Article in mBio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Discovery of Novel c-di-GMP-Related Genes inPathogens (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Functional analysis of cyclic diguanylate-modulating proteins inbioRxiv : the preprint server for biology · 2024
    Article
  7. Control of biofilm formation by anProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Control of Biofilm Formation by anbioRxiv : the preprint server for biology · 2023
    Article
  9. Review
  10. Article
  11. Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Nathan FeirerDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Jing XuDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Kylie D AllenDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA.
Benjamin J KoestlerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Eric L BrugerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Christopher M WatersDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Robert H WhiteDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA.
Clay FuquaDepartment of Biology, Indiana University, Bloomington, Indiana, USA cfuqua@indiana.edu.ORCID http://orcid.org/0000-0001-7051-1760
Indiana University Bloomington · USMichigan State University · USVirginia Tech · US

Funding

TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
Synthesis and function of a unipolar expolysaccharide in AgrobacteriumR01GM080546 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2007 to 2011
$1.3M
NIGMS NIH HHS GM080546NIGMS NIH HHS R01 GM080546NIGMS NIH HHS T32 GM007757NIGMS NIH HHS T32-GM007757
6 · The paper itself

Abstract

unlabelledThe motile-to-sessile transition is an important lifestyle switch in diverse bacteria and is often regulated by the intracellular second messenger cyclic diguanylate monophosphate (c-di-GMP). In general, high c-di-GMP concentrations promote attachment to surfaces, whereas cells with low levels of signal remain motile. In the plant pathogen Agrobacterium tumefaciens, c-di-GMP controls attachment and biofilm formation via regulation of a unipolar polysaccharide (UPP) adhesin. The levels of c-di-GMP in A. tumefaciens are controlled in part by the dual-function diguanylate cyclase-phosphodiesterase (DGC-PDE) protein DcpA. In this study, we report that DcpA possesses both c-di-GMP synthesizing and degrading activities in heterologous and native genetic backgrounds, a binary capability that is unusual among GGDEF-EAL domain-containing proteins. DcpA activity is modulated by a pteridine reductase called PruA, with DcpA acting as a PDE in the presence of PruA and a DGC in its absence. PruA enzymatic activity is required for the control of DcpA and through this control, attachment and biofilm formation. Intracellular pterin analysis demonstrates that PruA is responsible for the production of a novel pterin species. In addition, the control of DcpA activity also requires PruR, a protein encoded directly upstream of DcpA with a predicted molybdopterin-binding domain. PruR is hypothesized to be a potential signaling intermediate between PruA and DcpA through an as-yet-unidentified mechanism. This study provides the first prokaryotic example of a pterin-mediated signaling pathway and a new model for the regulation of dual-function DGC-PDE proteins. IMPORTANCE: Pathogenic bacteria often attach to surfaces and form multicellular communities called biofilms. Biofilms are inherently resilient and can be difficult to treat, resisting common antimicrobials. Understanding how bacterial cells transition to the biofilm lifestyle is essential in developing new therapeutic strategies. We have characterized a novel signaling pathway that plays a dominant role in the regulation of biofilm formation in the model pathogen Agrobacterium tumefaciens. This control pathway involves small metabolites called pterins, well studied in eukaryotes, but this is the first example of pterin-dependent signaling in bacteria. The described pathway controls levels of an important intracellular second messenger (cyclic diguanylate monophosphate) that regulates key bacterial processes such as biofilm formation, motility, and virulence. Pterins control the balance of activity for an enzyme that both synthesizes and degrades the second messenger. These findings reveal a complex, multistep pathway that modulates this enzyme, possibly identifying new targets for antibacterial intervention.

Indexed as

Bacterial AdhesionSignal TransductionAgrobacterium tumefaciensCyclic GMPEscherichia coli ProteinsGene Expression Regulation, BacterialModels, BiologicalPhosphoric Diester HydrolasesPhosphorus-Oxygen LyasesPterinsbis(3',5')-cyclic diguanylic acidCyclic GMPdiguanylate cyclaseEscherichia coli ProteinsPhosphoric Diester HydrolasesPhosphorus-Oxygen LyasesPterins

Identifiers

PMID26126849
PMCPMC4488946
OpenAlexW2119928653

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.