Evidence map›Paper›PMID 26126790›Full record

ArticlePhysiological genomics2015

Patterns of gene expression in the sheep heart during the perinatal period revealed by transcriptomic modeling.

Elaine M Richards, M Belen Rabaglino, Andrew Antolic, Charles E Wood, Maureen Keller-Wood

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptomic evidence that cortisol alters perinatal epicardial adipose tissue maturation.American journal of physiology. Endocrinology and metabolism · 2019
    Article
  5. Article
  6. Review
  7. Chronic maternal hypercortisolemia in late gestation alters fetal cardiac function at birth.American journal of physiology. Regulatory, integrative and comparative physiology · 2018
    Article
  8. Use of radiotelemetry to assess perinatal cardiac function in the ovine fetus and newborn.American journal of physiology. Regulatory, integrative and comparative physiology · 2017
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Elaine M RichardsDepartment of Pharmacodynamics, University of Florida, Gainesville, Florida; esumners@cop.ufl.edu.
M Belen RabaglinoDepartamento de Reproducción Animal, Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Córdoba, Argentina.
Andrew AntolicDepartment of Pharmacodynamics, University of Florida, Gainesville, Florida;
Charles E WoodDepartment of Physiology and Functional Genomics, University of Florida, Gainesville, Florida; and.
Maureen Keller-WoodDepartment of Pharmacodynamics, University of Florida, Gainesville, Florida;
University of Florida · USNational University of Río Cuarto · AR

Funding

Effects of maternal cortisol on fetal and neonatal growth and metabolismR01HD057871 · NICHD · UNIVERSITY OF FLORIDA · PI KELLER-WOOD, MAUREEN · 2009 to 2013
$1.5M
Cortisol at MR Mediate Fetal Physiologic/Genomic EffectsR01DK062080 · NIDDK · UNIVERSITY OF FLORIDA · PI KELLER-WOOD, MAUREEN · 2003 to 2007
$1.5M
NICHD NIH HHS HD-57871NICHD NIH HHS R01 HD057871NIDDK NIH HHS DK-60820NIDDK NIH HHS R01 DK062080
6 · The paper itself

Abstract

Septa from sheep hearts at 130 days gestation, term, and 14-day-old lambs were used to model the changes in gene expression patterns during the perinatal period using Agilent 15k ovine microarrays. We used Bioconductor for R to model five major patterns of coexpressed genes. Gene ontology and transcription factor analyses using Webgestalt modeled the biological significances and transcription factors of the gene expression patterns. Modeling indicated a decreased expression of genes associated with anatomical development and differentiation during this period, whereas those associated with increased protein synthesis and growth associated with maturation of the endoplasmic reticulum rose to term but did not further increase from the near term expression. Expression of genes associated with cell responsiveness, for example, immune responses, decreased at term but expression returned by postnatal day 14. Changes in genes related to metabolism showed differential substrate-associated patterns: those related to carbohydrate metabolism rose to term and remained stable thereafter, whereas those associated with fatty acid oxidation facility rose throughout the period. The timing of many of these maturational processes was earlier in relation to birth than in the rodent. The importance of the transcription factors, estrogen-related receptors, and v-myc avian myelocytomatosis viral oncogene homolog was also highlighted in the pattern of gene expression during development of the perinatal sheep heart.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAnimals, NewbornFemaleGene Expression ProfilingHeartModels, GeneticOligonucleotide Array Sequence AnalysisPregnancySheep, Domesticheartlambperinatal ontogenytranscriptomics

Identifiers

PMID26126790
PMCPMC4556942
OpenAlexW2140675877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.