Evidence map›Paper›PMID 26126179›Full record

ArticleTranslational psychiatry2014

Genes associated with the progression of neurofibrillary tangles in Alzheimer's disease.

A Miyashita, H Hatsuta, M Kikuchi, A Nakaya, Y Saito, T Tsukie, N Hara, S Ogishima, N Kitamura, K Akazawa and 7 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
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  16. Amyloid β-Oligomers Inhibit the Nuclear CaAntioxidants (Basel, Switzerland) · 2023
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    Article
  18. Article
  19. Exploring links between 2-oxoglutarate-dependent oxygenases and Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

A MiyashitaDepartment of Molecular Genetics, Bioresource Science Branch, Center for Bioresources, Brain Research Institute, Niigata University, Niigata, Japan.
H HatsutaDepartment of Neuropathology, Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology, Tokyo, Japan.
M KikuchiResearch Association for Biotechnology, Tokyo, Japan.
A NakayaCenter for Transdisciplinary Research, Niigata University, Niigata, Japan.
Y SaitoDepartment of Pathology, National Center Hospital of Neurology and Psychiatry, Tokyo, Japan.
T TsukieResearch Association for Biotechnology, Tokyo, Japan.
N HaraDepartment of Molecular Genetics, Bioresource Science Branch, Center for Bioresources, Brain Research Institute, Niigata University, Niigata, Japan.
S OgishimaDepartment of Health Record Informatics, Tohoku Medical Megabank Organization, Tohoku University, Miyagi, Japan.
N KitamuraDepartment of Medical Informatics, Niigata University, Niigata, Japan.
K AkazawaDepartment of Medical Informatics, Niigata University, Niigata, Japan.
A KakitaDepartment of Pathology, Brain Research Institute, Niigata University, Niigata, Japan.
H TakahashiDepartment of Pathology, Brain Research Institute, Niigata University, Niigata, Japan.
S MurayamaDepartment of Neuropathology, Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology, Tokyo, Japan.
Y IharaDepartment of Neuropathology, Faculty of Life and Medical Sciences, Doshisha University, Kyoto, Japan.
T IkeuchiDepartment of Molecular Genetics, Bioresource Science Branch, Center for Bioresources, Brain Research Institute, Niigata University, Niigata, Japan.
R KuwanoDepartment of Molecular Genetics, Bioresource Science Branch, Center for Bioresources, Brain Research Institute, Niigata University, Niigata, Japan.
Japanese Alzheimer's Disease Neuroimaging Initiative
Niigata University · JPTokyo Metropolitan Geriatric Hospital · JPDoshisha University · JPNational Center of Neurology and Psychiatry · JPTohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spreading of neurofibrillary tangles (NFTs), intraneuronal aggregates of highly phosphorylated microtubule-associated protein tau, across the human brain is correlated with the cognitive severity of Alzheimer's disease (AD). To identify genes relevant to NFT expansion defined by the Braak stage, we conducted whole-genome exon array analysis with an exploratory sample set consisting of 213 human post-mortem brain tissue specimens from the entorinal, temporal and frontal cortices of 71 brain-donor subjects: Braak NFT stages 0 (N=13), I-II (N=20), III-IV (N=19) and V-VI (N=19). We identified eight genes, RELN, PTGS2, MYO5C, TRIL, DCHS2, GRB14, NPAS4 and PHYHD1, associated with the Braak stage. The expression levels of three genes, PHYHD1, MYO5C and GRB14, exhibited reproducible association on real-time quantitative PCR analysis. In another sample set, including control subjects (N=30), and in patients with late-onset AD (N=37), dementia with Lewy bodies (N=17) and Parkinson disease (N=36), the expression levels of two genes, PHYHD1 and MYO5C, were obviously associated with late-onset AD. Protein-protein interaction network analysis with a public database revealed that PHYHD1 interacts with MYO5C via POT1, and PHYHD1 directly interacts with amyloid beta-peptide 42. It is thus likely that functional failure of PHYHD1 and MYO5C could lead to AD development.

Indexed as

Adaptor Proteins, Signal TransducingAlzheimer DiseaseBasic Helix-Loop-Helix ProteinsBrainCell Adhesion Molecules, NeuronalCyclooxygenase 2Disease ProgressionExtracellular Matrix ProteinsFemaleGene Expression ProfilingGene OntologyGenesGenetic Association StudiesGenetic Predisposition to DiseaseHumansIntercellular Signaling Peptides and ProteinsAdaptor Proteins, Signal TransducingBasic Helix-Loop-Helix ProteinsCell Adhesion Molecules, NeuronalCyclooxygenase 2Extracellular Matrix ProteinsGRB14 protein, humanIntercellular Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMYO5C protein, humanMyosin Type VNerve Tissue ProteinsNPAS4 protein, humanPTGS2 protein, humanReelin ProteinRELN protein, humanSerine EndopeptidasesTRIL protein, human

Identifiers

PMID26126179
PMCPMC4080317
OpenAlexW1551082957

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.