ArticleThe ISME journal2015
Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis.
Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Gut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome.Gut microbesTrial
- A novel lineage of large aquatic bacteriophages identified through metagenomics.Archives of virology · 2025Article
- Article
- Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts.Communications biology · 2024Article
- An Appraisal of Bacteriophage Isolation Techniques from Environment.Microbial ecology · 2022Review
- Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats.Microbiology spectrum · 2021Article
- Article
- Metavirome and its functional diversity analysis through microbiome study of the Sikkim Himalayan hot spring solfataric mud sediments.Current research in microbial sciences · 2020Article
- New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities.The ISME journal · 2020Article
- Depth-related variability in viral communities in highly stratified sulfidic mine tailings.Microbiome · 2020Article
- Discovery and Characterization of Thermoproteus Spherical Piliferous Virus 1: a Spherical Archaeal Virus Decorated with Unusual Filaments.Journal of virology · 2020Article
- Surface resistance to SSVs and SIRVs in pilin deletions of Sulfolobus islandicus.Molecular microbiology · 2020Article
- An Uncultivated Virus Infecting a Nanoarchaeal Parasite in the Hot Springs of Yellowstone National Park.Journal of virology · 2020Article
- New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.Environmental microbiology · 2019Article
- Diversified local CRISPR-Cas immunity to viruses of Sulfolobus islandicus.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019Article
- Biogeography and taxonomic overview of terrestrial hot spring thermophilic phages.Extremophiles : life under extreme conditions · 2018Review
- A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments.The ISME journal · 2018Article
- Corallivory and the microbial debacle in two branching scleractinians.The ISME journal · 2018Article
- Review
- Viruses of archaea: Structural, functional, environmental and evolutionary genomics.Virus research · 2018Review
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding of viral assemblage structure in natural environments remains a daunting task. Total viral assemblage sequencing (for example, viral metagenomics) provides a tractable approach. However, even with the availability of next-generation sequencing technology it is usually only possible to obtain a fragmented view of viral assemblages in natural ecosystems. In this study, we applied a network-based approach in combination with viral metagenomics to investigate viral assemblage structure in the high temperature, acidic hot springs of Yellowstone National Park, USA. Our results show that this approach can identify distinct viral groups and provide insights into the viral assemblage structure. We identified 110 viral groups in the hot springs environment, with each viral group likely representing a viral family at the sub-family taxonomic level. Most of these viral groups are previously unknown DNA viruses likely infecting archaeal hosts. Overall, this study demonstrates the utility of combining viral assemblage sequencing approaches with network analysis to gain insights into viral assemblage structure in natural ecosystems.
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