Evidence map›Paper›PMID 26125682›Full record

ArticleThe ISME journal2015

Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation.

Bernhard Tschitschko, Timothy J Williams, Michelle A Allen, David Páez-Espino, Nikos Kyrpides, Ling Zhong, Mark J Raftery, Ricardo Cavicchioli

Abstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Breaking the Ice: A Review of Phages in Polar Ecosystems.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  7. Article
  8. Article
  9. Improving the genetic system forFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Microbial diversity in extreme environments.Nature reviews. Microbiology · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Architecture and modular assembly ofProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bernhard TschitschkoSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
Timothy J WilliamsSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
Michelle A AllenSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
David Páez-EspinoDepartment of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Nikos KyrpidesDepartment of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Ling ZhongBioanalytical Mass Spectrometry Facility, The University of New South Wales, Sydney, New South Wales, Australia.
Mark J RafteryBioanalytical Mass Spectrometry Facility, The University of New South Wales, Sydney, New South Wales, Australia.
Ricardo CavicchioliSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite knowledge that viruses are abundant in natural ecosystems, there is limited understanding of which viruses infect which hosts, and how both hosts and viruses respond to those interactions-interactions that ultimately shape community structure and dynamics. In Deep Lake, Antarctica, intergenera gene exchange occurs rampantly within the low complexity, haloarchaea-dominated community, strongly balanced by distinctions in niche adaptation which maintain sympatric speciation. By performing metaproteomics for the first time on haloarchaea, genomic variation of S-layer, archaella and other cell surface proteins was linked to mechanisms of infection evasion. CRISPR defense systems were found to be active, with haloarchaea responding to at least eight distinct types of viruses, including those infecting between genera. The role of BREX systems in defending against viruses was also examined. Although evasion and defense were evident, both hosts and viruses also may benefit from viruses carrying and expressing host genes, thereby potentially enhancing genetic variation and phenotypic differences within populations. The data point to a complex inter-play leading to a dynamic optimization of host-virus interactions. This comprehensive overview was achieved only through the integration of results from metaproteomics, genomics and metagenomics.

Indexed as

Water MicrobiologyAcclimatizationAntarctic RegionsArchaeaArchaeal VirusesCapsid ProteinsCell MembraneCRISPR-Cas SystemsEcosystemGenetic VariationLakesMetagenomeMetagenomicsPhenotypeProteomicsVirusesCapsid Proteins

Identifiers

PMID26125682
PMCPMC4542027

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.