ArticleThe ISME journal2016
Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.
Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Global Meta-analysis of Airborne Bacterial Communities and Associations with Anthropogenic Activities.Environmental science & technology · 2022Pooled it
- Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis.BMC genomics · 2025Article
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- Contrasting sensitivity of soil bacterial and fungal community composition to one year of water limitation in Scots pine mesocosms.FEMS microbiology ecology · 2023Article
- Fire and Rhizosphere Effects on Bacterial Co-Occurrence Patterns.Microorganisms · 2023Article
- Genomic microbiome analyses of surface sand samples from the Kyzyl-Kum Desert (Uzbekistan): characterization and comparative study.Archives of microbiology · 2023Article
- Culturable and unculturable potential heterotrophic microbiological threats to the oldest pyramids of the Memphis necropolis, Egypt.Frontiers in microbiology · 2023Article
- Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition.PloS one · 2023Article
- Grape Cultivar Features Differentiate the Grape Rhizosphere Microbiota.Plants (Basel, Switzerland) · 2022Article
- Diversity and adaptation properties of actinobacteria associated with Tunisian stone ruins.Frontiers in microbiology · 2022Article
- Genotype-phenotype correlations within theFrontiers in microbiology · 2022Article
- Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city.Microbiome · 2021Article
- Draft Genome Sequences ofMicrobiology resource announcements · 2021Article
- Living Lithic and Sublithic Bacterial Communities in Namibian Drylands.Microorganisms · 2021Article
- Size-Resolved Community Structure of Bacteria and Fungi Transported by Dust in the Middle East.Frontiers in microbiology · 2021Article
- Properties ofFrontiers in microbiology · 2021Article
- Bioprospecting of Soil-Derived Actinobacteria Along the Alar-Hotan Desert Highway in the Taklamakan Desert.Frontiers in microbiology · 2021Article
- Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing.PloS one · 2020Article
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Geodermatophilaceae are unique model systems to study the ability to thrive on or within stones and their proteogenomes (referring to the whole protein arsenal encoded by the genome) could provide important insight into their adaptation mechanisms. Here we report the detailed comparative genome analysis of Blastococcus saxobsidens (Bs), Modestobacter marinus (Mm) and Geodermatophilus obscurus (Go) isolated respectively from the interior and the surface of calcarenite stones and from desert sandy soils. The genome-scale analysis of Bs, Mm and Go illustrates how adaptation to these niches can be achieved through various strategies including 'molecular tinkering/opportunism' as shown by the high proportion of lost, duplicated or horizontally transferred genes and ORFans. Using high-throughput discovery proteomics, the three proteomes under unstressed conditions were analyzed, highlighting the most abundant biomarkers and the main protein factors. Proteomic data corroborated previously demonstrated stone-related ecological distribution. For instance, these data showed starvation-inducible, biofilm-related and DNA-protection proteins as signatures of the microbes associated with the interior, surface and outside of stones, respectively.
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