Evidence map›Paper›PMID 26125533›Full record

ArticlePediatric emergency care2015

RNA Biosignatures in Adolescent Patients in a Pediatric Emergency Department With Pelvic Inflammatory Disease.

Fran Balamuth, Zhe Zhang, Eric Rappaport, Katie Hayes, Cynthia Mollen, Kathleen E Sullivan

Abstract read
In one paragraph

Article in Pediatric emergency care, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Microbial cell (Graz, Austria) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fran BalamuthFrom the *Division of Emergency Medicine, The Children's Hospital of Philadelphia; †Perelman School of Medicine, University of Pennsylvania; ‡Bioinformatics Core Facility, §Microarray Core Facility, The Children's Hospital of Philadelphia; ∥Division of Emergency Medicine, Children's National Medical Center; and ¶Division of Allergy and Immunology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Zhe Zhang
Eric Rappaport
Katie Hayes
Cynthia Mollen
Kathleen E Sullivan

Funding

Institutional Clinical and Translational Science AwardUL1TR000003 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2012 to 2015
$38.9M
Enabling Medical Research Growth in Emergency MedicineK12HL109009 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KIMMEL, STEPHEN E. · 2011 to 2015
$3.4M
NCATS NIH HHS UL1 TR000003NCATS NIH HHS UL1TR000003NHLBI NIH HHS K12 HL109009NHLBI NIH HHS K12-HL109009
6 · The paper itself

Abstract

backgroundAdolescents are at high risk for pelvic inflammatory disease (PID). Because accurate diagnosis of PID is difficult, and complications of untreated PID are significant, novel methods to improve diagnosis are essential.

objectivesTo determine if patients with PID have unique RNA expression patterns compared to controls.

methodsPeripheral blood was collected from adolescent females with PID in the emergency department, and from control patients in the operating room. RNA was isolated, and microarray analysis was performed. Initial analysis involved a training set of 18 patients (9 PID patients with either Neisseria gonorrhoeae or Chlamydia trachomatis infection and 9 control patients). Supervised and unsupervised cluster analyses were performed, followed by network analysis. The training set was used to classify a set of 15 additional PID patients and 2 controls.

resultsSupervised cluster analysis of the training set revealed 170 genes which were differentially expressed in PID patients versus controls. Network analysis indicated that several differentially expressed genes are involved in immune activation. Analysis of additional PID patients based on the training set findings revealed that patients with positive testing for Trichomonas vaginalis partitioned with the PID group, whereas patients with no organism identified partitioned with both groups.

conclusionsRNA sample collection from adolescents in the emergency department is feasible. Genes were identified which were differentially expressed in PID patients versus controls, many of which are involved in inflammation. Future studies should confirm the training set findings on a larger sample and may lead to improved accuracy of PID diagnosis.

Indexed as

AdolescentChildChlamydia trachomatisCross-Sectional StudiesEmergency Service, HospitalFemaleGene ExpressionGenetic MarkersHospitals, PediatricHumansMicroarray AnalysisNeisseria gonorrhoeaePelvic Inflammatory DiseaseRNASexually Transmitted DiseasesTrichomonas vaginalisGenetic MarkersRNA

Identifiers

PMID26125533
PMCPMC4495580

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.