Evidence map›Paper›PMID 26124774›Full record

ArticleFrontiers in genetics2015

Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages.

Clément Lier, Elodie Baticle, Philippe Horvath, Eve Haguenoer, Anne-Sophie Valentin, Philippe Glaser, Laurent Mereghetti, Philippe Lanotte

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Enhanced editing ofApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Article
  5. A CRISPRi library screen in group BInfection and immunity · 2025
    Article
  6. CRISPR typing and phage content of colonizing Group BFrontiers in cellular and infection microbiology · 2025
    Article
  7. A CRISPRi Library Screen in Group BbioRxiv : the preprint server for biology · 2024
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Diversity of CRISPR-Cas type II-A systems inFrontiers in microbiology · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. New Insights onFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Clément LierUMR1282 Infectiologie et Santé Publique, Bactéries et Risque Materno-Foetal, Université de Tours, Tours France ; INRA, UMR1282 Infectiologie et Santé Publique, Nouzilly France ; Service de Bactériologie-Virologie, Hôpital Bretonneau - Centre Hospitalier Régional et Universitaire de Tours, Tours France.
Elodie BaticleService de Bactériologie-Virologie, Hôpital Bretonneau - Centre Hospitalier Régional et Universitaire de Tours, Tours France.
Philippe HorvathDuPont Nutrition and Health, Dangé-Saint-Romain France.
Eve HaguenoerUMR1282 Infectiologie et Santé Publique, Bactéries et Risque Materno-Foetal, Université de Tours, Tours France ; INRA, UMR1282 Infectiologie et Santé Publique, Nouzilly France.
Anne-Sophie ValentinUMR1282 Infectiologie et Santé Publique, Bactéries et Risque Materno-Foetal, Université de Tours, Tours France ; INRA, UMR1282 Infectiologie et Santé Publique, Nouzilly France ; Service de Bactériologie-Virologie, Hôpital Bretonneau - Centre Hospitalier Régional et Universitaire de Tours, Tours France.
Philippe GlaserUnité de Biologie des Bactéries Pathogènes à Gram Positif, Institut Pasteur, Paris France ; CNRS UMR 3525, Paris France.
Laurent MereghettiUMR1282 Infectiologie et Santé Publique, Bactéries et Risque Materno-Foetal, Université de Tours, Tours France ; INRA, UMR1282 Infectiologie et Santé Publique, Nouzilly France ; Service de Bactériologie-Virologie, Hôpital Bretonneau - Centre Hospitalier Régional et Universitaire de Tours, Tours France.
Philippe LanotteUMR1282 Infectiologie et Santé Publique, Bactéries et Risque Materno-Foetal, Université de Tours, Tours France ; INRA, UMR1282 Infectiologie et Santé Publique, Nouzilly France ; Service de Bactériologie-Virologie, Hôpital Bretonneau - Centre Hospitalier Régional et Universitaire de Tours, Tours France.
Centre Hospitalier Universitaire de Tours · FRInfectiologie Animale et Santé Publique · FRUniversité de Tours · FRCentre National de la Recherche Scientifique · FRDuPont (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas systems (clustered regularly interspaced short palindromic repeats/CRISPR-associated proteins) are found in 90% of archaea and about 40% of bacteria. In this original system, CRISPR arrays comprise short, almost unique sequences called spacers that are interspersed with conserved palindromic repeats. These systems play a role in adaptive immunity and participate to fight non-self DNA such as integrative and conjugative elements, plasmids, and phages. In Streptococcus agalactiae, a bacterium implicated in colonization and infections in humans since the 1960s, two CRISPR-Cas systems have been described. A type II-A system, characterized by proteins Cas9, Cas1, Cas2, and Csn2, is ubiquitous, and a type I-C system, with the Cas8c signature protein, is present in about 20% of the isolates. Unlike type I-C, which appears to be non-functional, type II-A appears fully functional. Here we studied type II-A CRISPR-cas loci from 126 human isolates of S. agalactiae belonging to different clonal complexes that represent the diversity of the species and that have been implicated in colonization or infection. The CRISPR-cas locus was analyzed both at spacer and repeat levels. Major distinctive features were identified according to the phylogenetic lineages previously defined by multilocus sequence typing, especially for the sequence type (ST) 17, which is considered hypervirulent. Among other idiosyncrasies, ST-17 shows a significantly lower number of spacers in comparison with other lineages. This characteristic could reflect the peculiar virulence or colonization specificities of this lineage.

Indexed as

CRISPR-CasphylogenyST-17Streptococcus agalactiaetyping

Identifiers

PMID26124774
PMCPMC4466440
OpenAlexW1559622865

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.