Evidence map›Paper›PMID 26124755›Full record

ArticleFrontiers in microbiology2015

Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ.

Norbert O E Vischer, Jolanda Verheul, Marten Postma, Bart van den Berg van Saparoea, Elisa Galli, Paolo Natale, Kenn Gerdes, Joen Luirink, Waldemar Vollmer, Miguel Vicente and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 119 citations in OpenAlex.

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  15. Mechanistic insights of magnolol antimicrobial activity againstFrontiers in cellular and infection microbiology · 2023
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Norbert O E VischerBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam Amsterdam, Netherlands.
Jolanda VerheulBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam Amsterdam, Netherlands.
Marten PostmaBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam Amsterdam, Netherlands ; Molecular Cytology, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam Amsterdam, Netherlands.
Bart van den Berg van SaparoeaBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam Amsterdam, Netherlands ; Department of Molecular Microbiology, Institute of Molecular Cell Biology, VU University Amsterdam, Netherlands.
Elisa GalliCentre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, Newcastle University Newcastle upon Tyne, UK.
Paolo NataleCentro Nacional de Biotecnología-Consejo Superior de Investigaciones Científicas Madrid, Spain.
Kenn GerdesCentre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, Newcastle University Newcastle upon Tyne, UK ; Department of Biology, University of Copenhagen Copenhagen, Denmark.
Joen LuirinkDepartment of Molecular Microbiology, Institute of Molecular Cell Biology, VU University Amsterdam, Netherlands.
Waldemar VollmerCentre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, Newcastle University Newcastle upon Tyne, UK.
Miguel VicenteCentro Nacional de Biotecnología-Consejo Superior de Investigaciones Científicas Madrid, Spain.
Tanneke den BlaauwenBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam Amsterdam, Netherlands.
University of Amsterdam · NLAmsterdam UMC Location VUmc · NLConsejo Superior de Investigaciones Científicas · ESNewcastle University · GBUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rod-shaped Gram-negative bacterium Escherichia coli multiplies by elongation followed by binary fission. Longitudinal growth of the cell envelope and synthesis of the new poles are organized by two protein complexes called elongasome and divisome, respectively. We have analyzed the spatio-temporal localization patterns of many of these morphogenetic proteins by immunolabeling the wild type strain MC4100 grown to steady state in minimal glucose medium at 28°C. This allowed the direct comparison of morphogenetic protein localization patterns as a function of cell age as imaged by phase contrast and fluorescence wide field microscopy. Under steady state conditions the age distribution of the cells is constant and is directly correlated to cell length. To quantify cell size and protein localization parameters in 1000s of labeled cells, we developed 'Coli-Inspector,' which is a project running under ImageJ with the plugin 'ObjectJ.' ObjectJ organizes image-analysis tasks using an integrated approach with the flexibility to produce different output formats from existing markers such as intensity data and geometrical parameters. ObjectJ supports the combination of automatic and interactive methods giving the user complete control over the method of image analysis and data collection, with visual inspection tools for quick elimination of artifacts. Coli-inspector was used to sort the cells according to division cycle cell age and to analyze the spatio-temporal localization pattern of each protein. A unique dataset has been created on the concentration and position of the proteins during the cell cycle. We show for the first time that a subset of morphogenetic proteins have a constant cellular concentration during the cell division cycle whereas another set exhibits a cell division cycle dependent concentration variation. Using the number of proteins present at midcell, the stoichiometry of the divisome is discussed.

Indexed as

divisomeFtsNFtsZimage analysisimmunolocalizationLpoAnon-destructive markingPBP1B

Identifiers

PMID26124755
PMCPMC4462998
OpenAlexW1572546670

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.