Evidence map›Paper›PMID 26124095›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking.

Alan S Futran, Saw Kyin, Stanislav Y Shvartsman, A James Link

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. ThebioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. TheeLife · 2022
    Article
  13. Article
  14. Noncanonical function of Capicua as a growth termination signal inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Capicua in Human Cancer.Trends in cancer · 2021
    Review
  19. Negative MAPK-ERK regulation sustains CIC-DUX4 oncoprotein expression in undifferentiated sarcoma.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Regulation and function of capicua in mammals.Experimental & molecular medicine · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alan S FutranDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544;
Saw KyinDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544; Department of Molecular Biology, Princeton University, Princeton, NJ 08544; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544 ajlink@princeton.edu stas@princeton.edu.
A James LinkDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544; Department of Molecular Biology, Princeton University, Princeton, NJ 08544; ajlink@princeton.edu stas@princeton.edu.ORCID http://orcid.org/0000-0001-5066-9691
Princeton University · US

Funding

Systems biology of MAPK signaling in early drosophila embryoR01GM086537 · NIGMS · PRINCETON UNIVERSITY · PI BURDINE, REBECCA D., GOLDSMITH, ELIZABETH J. · 2011 to 2018
$3.1M
NIGMS NIH HHS GM086537NIGMS NIH HHS R01 GM086537
6 · The paper itself

Abstract

Extracellular signal-regulated kinase (ERK) coordinates cellular responses to a range of stimuli by phosphorylating its numerous substrates. One of these substrates, Capicua (Cic), is a transcriptional repressor that was first identified in Drosophila and has been implicated in a number of human diseases. Here we use a chemical biology approach to map the binding interface of ERK and Cic. The noncanonical amino acid p-azidophenylalanine (AzF) was introduced into the ERK-binding region of Drosophila Cic, and photocrosslinking and tandem mass spectrometry were used to pinpoint its binding site on ERK. We also identified the ERK-binding region of human Cic and showed that it binds to the same site on ERK despite lacking conservation with the Drosophila Cic binding region. Finally, we mapped the amino acids involved in human Cic binding to ERK using AzF-labeled ERK. These results reveal the molecular details of the ERK-Cic interaction and demonstrate that the photocrosslinking approach is complementary to existing methods for mapping kinase-substrate binding interfaces.

Indexed as

Amino Acid SequenceAnimalsBinding SitesDrosophilaDrosophila ProteinsExtracellular Signal-Regulated MAP KinasesHMGB ProteinsHumansMass SpectrometryMolecular Sequence DataPhotochemical ProcessesRepressor Proteinscic protein, DrosophilaDrosophila ProteinsExtracellular Signal-Regulated MAP KinasesHMGB ProteinsRepressor Proteinsphotocrosslinkingprotein–protein interactionssignal transduction

Identifiers

PMID26124095
PMCPMC4507193
OpenAlexW1893428849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.