Evidence map›Paper›PMID 26123767›Full record

ArticleThe European physical journal. E, Soft matter2015

Equilibrium gels of trivalent DNA-nanostars: Effect of the ionic strength on the dynamics.

Francesca Bomboi, Silvia Biffi, Roberto Cerbino, Tommaso Bellini, Federico Bordi, Francesco Sciortino

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Article in The European physical journal. E, Soft matter, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Phase-transition-like behaviors of sequence-selective dynamic bonds.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Amphiphilic DNA nanostructures for bottom-up synthetic biology.Chemical communications (Cambridge, England) · 2021
    Review
  4. Review
  5. Article
  6. Article
  7. Re-entrant DNA gels.Nature communications · 2016
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Francesca BomboiDepartment of Physics, Sapienza Università di Roma, Piazzale Aldo Moro 2, I-00185, Roma, Italy. francesca.bomboi@uniroma1.it.
Silvia BiffiDepartment of Medical Biotechnology and Translational Medicine, Università di Milano, I-20133, Milano, Italy.
Roberto CerbinoDepartment of Medical Biotechnology and Translational Medicine, Università di Milano, I-20133, Milano, Italy.
Tommaso BelliniDepartment of Medical Biotechnology and Translational Medicine, Università di Milano, I-20133, Milano, Italy.
Federico BordiDepartment of Physics and CNR-ISC, Sapienza Università di Roma, Piazzale Aldo Moro 2, I-00185, Roma, Italy.
Francesco SciortinoDepartment of Physics and CNR-ISC, Sapienza Università di Roma, Piazzale Aldo Moro 2, I-00185, Roma, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Self-assembling DNA-nanostars are ideal candidates to explore equilibrium gelation in systems composed of limited-valence particles. We present here a light scattering study of the dynamics in a trivalent DNA-nanostars equilibrium gel and of its dependence on ionic strength and concentration. Reversible bonds between different nanostars, whose formation is sensitively dependent on temperature, concentration and ionic strength, are provided by complementary DNA sticky ends. We find that the decay of the density correlations is described by a two-step relaxation process characterised by: i) a slow time scale that varies over nearly four orders of magnitude in a temperature window of less than 30 degrees; ii) an increase of the amplitude (the so-called non-ergodicity factor) of the slow relaxation. The slow process follows an Arrhenius law with temperature. We observe that the activation enthalpy does not depend on the ionic strength and that the dependence of the relaxation time on the ionic strength can be rationalized in terms of the free-energy cost of forming a sticky-end duplex. Finally, we observe that dynamics is insensitive to nanostar concentration, in full agreement with the predicted behaviour in equilibrium gels.

Indexed as

Base SequenceDNAGelsMolecular Dynamics SimulationMolecular Sequence DataNanoparticlesOsmolar ConcentrationDNAGels

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.