Evidence map›Paper›PMID 26121980›Full record

ArticleBMC genomics2015

Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.

Lata Chauhan, Gregory D Jenkins, Neha Bhise, Tanya Feldberg, Taraswi Mitra-Ghosh, Brooke L Fridley, Jatinder K Lamba

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. FLIP the Switch: Regulation of Apoptosis and Necroptosis by cFLIP.International journal of molecular sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Lata ChauhanDepartment of Pharmacotherapy and Translational Research, University of Florida, Gainesville, FL, USA. lchauhan@cop.ufl.edu.
Gregory D JenkinsDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, USA. Jenkins.Gregory@mayo.edu.
Neha BhiseDepartment of Experimental and Clinical Pharmacology, University of Minnesota, Minneapolis, MN, USA. bhise002@umn.edu.
Tanya FeldbergDepartment of Experimental and Clinical Pharmacology, University of Minnesota, Minneapolis, MN, USA. feldb001@umn.edu.
Taraswi Mitra-GhoshDepartment of Experimental and Clinical Pharmacology, University of Minnesota, Minneapolis, MN, USA. tmitragh@umn.edu.
Brooke L FridleyDepartment of Biostatistics, University of Kansas Medical Center, Kansas City, KS, USA. bfridley@kumc.edu.
Jatinder K LambaDepartment of Pharmacotherapy and Translational Research, University of Florida, Gainesville, FL, USA. jlamba@cop.ufl.edu.
University of Minnesota · USUniversity of Florida · USMayo Clinic in Florida · USUniversity of Kansas Medical Center · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Transgenic & Gene-Targeting Shared ResourceP30CA168524 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ROY A. JENSEN · 2012 to 2026
$40.1M
Pharmacogenomics of Ara-C in AMLR01CA132946 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., POUNDS, STANLEY BARRETT · 2008 to 2025
$5.3M
Impact of genetic variation on response to GO therapy in COG-AML clinical trialsR21CA155524 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., WALTER, ROLAND BRUNO · 2012 to 2013
$439k
Bayesian Integrative Clustering for Determining Molecular Based Cancer SubtyR21CA182715 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI FRIDLEY, BROOKE L · 2014 to 2015
$377k
Bayesian hierarchical nonlinear models for pharmacogenomic cytotoxicity studiesR21GM086689 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI FRIDLEY, BROOKE L · 2011 to 2012
$232k
NCI NIH HHS P30 CA168524NCI NIH HHS P30-CA168524NCI NIH HHS R01 CA132946NCI NIH HHS R01-CA132946NCI NIH HHS R21 CA155524NCI NIH HHS R21-CA155524NCI NIH HHS R21 CA182715NCI NIH HHS R21-CA182715NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20-GM103418NIGMS NIH HHS R21 GM086689NIGMS NIH HHS R21-GM86689
6 · The paper itself

Abstract

backgroundTriptolide is a therapeutic diterpenoid derived from the Chinese herb Tripterygium wilfordii Hook f. Triptolide has been shown to induce apoptosis by activation of pro-apoptotic proteins, inhibiting NFkB and c-KIT pathways, suppressing the Jak2 transcription, activating MAPK8/JNK signaling and modulating the heat shock responses.

resultsIn the present study, we used lymphoblast cell lines (LCLs) derived from 55 unrelated Caucasian subjects to identify genetic markers predictive of cellular sensitivity to triptolide using genome wide association study. Our results identified SNPs on chromosome 2 associated with triptolide IC50 (p < 0.0001). This region included biologically interesting genes as CFLAR, PPIl3, Caspase 8/10, NFkB and STAT6. Identification of a splicing-SNP rs10190751, which regulates CFLAR alternatively spliced isoforms predictive of the triptolide cytotoxicity suggests its role in triptolides action. Our results from functional studies in Panc-1 cell lines further demonstrate potential role of CFLAR in triptolide toxicity. Analysis of gene-expression with cytotoxicity identified JAK1 expression to be a significant predictor of triptolide sensitivity.

conclusionsOverall out results identified genetic factors associated with triptolide chemo-sensitivity thereby opening up opportunities to better understand its mechanism of action as well as utilize these biomarkers to predict therapeutic response in patients.

Indexed as

Genome, HumanGenome-Wide Association StudyCASP8 and FADD-Like Apoptosis Regulating ProteinCell Line, TumorCell SurvivalDiterpenesDrugs, Chinese HerbalEpoxy CompoundsGene Expression Regulation, NeoplasticHumansJanus Kinase 1PhenanthrenesPolymorphism, Single NucleotideQuantitative Trait LociRNA InterferenceRNA, Small InterferingCASP8 and FADD-Like Apoptosis Regulating ProteinCFLAR protein, humanDiterpenesDrugs, Chinese HerbalEpoxy CompoundsJAK1 protein, humanJanus Kinase 1PhenanthrenesRNA, Small Interferingtriptolide

Identifiers

PMID26121980
PMCPMC4485866
OpenAlexW2123066708

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.