Evidence map›Paper›PMID 26121242›Full record

ArticlePloS one2015

Specificity and Strain-Typing Capabilities of Nanorod Array-Surface Enhanced Raman Spectroscopy for Mycoplasma pneumoniae Detection.

Kelley C Henderson, Alvaro J Benitez, Amy E Ratliff, Donna M Crabb, Edward S Sheppard, Jonas M Winchell, Richard A Dluhy, Ken B Waites, T Prescott Atkinson, Duncan C Krause

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Laboratory diagnosis and treatment ofAnnals of medicine · 2024
    Review
  4. Article
  5. Review
  6. Molecular Tools for TypingFrontiers in microbiology · 2022
    Review
  7. Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Review
  8. Article
  9. The Indian journal of medical research · 2018
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kelley C HendersonDepartment of Microbiology, University of Georgia, Athens, GA, United States of America.
Alvaro J BenitezPneumonia Response and Surveillance Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States of America.
Amy E RatliffDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Donna M CrabbDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Edward S SheppardDepartment of Microbiology, University of Georgia, Athens, GA, United States of America.
Jonas M WinchellPneumonia Response and Surveillance Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States of America.
Richard A DluhyDepartment of Chemistry, University of Georgia, Athens, GA, United States of America.
Ken B WaitesDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, United States of America.
T Prescott AtkinsonDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, AL, United States of America.
Duncan C KrauseDepartment of Microbiology, University of Georgia, Athens, GA, United States of America.
University of Alabama at Birmingham · USUniversity of Georgia · USCenters for Disease Control and Prevention · US

Funding

Determination of Markers of High Pathogenicity in InfluenzaR01GM102546 · NIGMS · UNIVERSITY OF GEORGIA · PI DLUHY, RICHARD A. · 2012 to 2015
$1.1M
Nanotechnology-Based Detection of Mycoplasma pneumoniaeR21AI096364 · NIAID · UNIVERSITY OF GEORGIA · PI KRAUSE, DUNCAN C · 2012 to 2013
$413k
NIAID NIH HHS AI096364NIAID NIH HHS R21 AI096364NIGMS NIH HHS GM102546NIGMS NIH HHS R01 GM102546
6 · The paper itself

Abstract

Mycoplasma pneumoniae is a cell wall-less bacterial pathogen of the human respiratory tract that accounts for > 20% of all community-acquired pneumonia (CAP). At present the most effective means for detection and strain-typing is quantitative polymerase chain reaction (qPCR), which can exhibit excellent sensitivity and specificity but requires separate tests for detection and genotyping, lacks standardization between available tests and between labs, and has limited practicality for widespread, point-of-care use. We have developed and previously described a silver nanorod array-surface enhanced Raman Spectroscopy (NA-SERS) biosensing platform capable of detecting M. pneumoniae with statistically significant specificity and sensitivity in simulated and true clinical throat swab samples, and the ability to distinguish between reference strains of the two main genotypes of M. pneumoniae. Furthermore, we have established a qualitative lower endpoint of detection for NA-SERS of < 1 genome equivalent (cell/μl) and a quantitative multivariate detection limit of 5.3 ± 1 cells/μl. Here we demonstrate using partial least squares- discriminatory analysis (PLS-DA) of sample spectra that NA-SERS correctly identified M. pneumoniae clinical isolates from globally diverse origins and distinguished these from a panel of 12 other human commensal and pathogenic mycoplasma species with 100% cross-validated statistical accuracy. Furthermore, PLS-DA correctly classified by strain type all 30 clinical isolates with 96% cross-validated accuracy for type 1 strains, 98% cross-validated accuracy for type 2 strains, and 90% cross-validated accuracy for type 2V strains.

Indexed as

NanotubesHumansLimit of DetectionMycoplasma pneumoniaePneumonia, MycoplasmaSensitivity and SpecificitySpectrum Analysis, Raman

Identifiers

PMID26121242
PMCPMC4487258
OpenAlexW1505830221

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.