ArticlePlant molecular biology2015
Genome-wide analysis reveals phytohormone action during cassava storage root initiation.
Article in Plant molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 54 citations in OpenAlex.
- Transcriptome profiling of Rehmannia glutinosa uncovers ABA/GA antagonism mechanisms in tuberous root initiation.Functional & integrative genomics · 2026Article
- High-resolution transcriptomics of stem and storage root vascular cambia highlight regulatory processes for xylem parenchyma differentiation in cassava.BMC genomics · 2025Article
- Trehalose metabolism coordinates transcriptional regulatory control and metabolic requirements to trigger the onset of cassava storage root initiation.Scientific reports · 2023Article
- Integrating Full-Length and Second-Generation Transcriptomics to Reveal Differentially Expressed Genes Associated with the Development ofLife (Basel, Switzerland) · 2023Article
- Integrative Analysis of the Transcriptome and Metabolome Reveals the Developmental Mechanisms and Metabolite Biosynthesis of the Tuberous Roots ofMolecules (Basel, Switzerland) · 2023Article
- CRISPR/Cas9: an advanced platform for root and tuber crops improvement.Frontiers in genome editing · 2023Review
- Transcriptomic analysis of Chinese yam (Frontiers in nutrition · 2023Article
- Integrative omics approaches revealed a crosstalk among phytohormones during tuberous root development in cassava.Plant molecular biology · 2022Article
- Set up from the beginning: The origin and early development of cassava storage roots.Plant, cell & environment · 2022Article
- Single-cell transcriptome sequencing atlas of cassava tuberous root.Frontiers in plant science · 2022Article
- Auxin signaling and vascular cambium formation enable storage metabolism in cassava tuberous roots.Journal of experimental botany · 2021Article
- Transcriptome integrated metabolic modeling of carbon assimilation underlying storage root development in cassava.Scientific reports · 2021Article
- Topological clustering of regulatory genes confers pathogenic tolerance to cassava brown streak virus (CBSV) in cassava.Scientific reports · 2021Article
- Genome-Wide Analysis of Tubulin Gene Family in Cassava and Expression of Family MemberPlants (Basel, Switzerland) · 2021Article
- Seasonal Variation in Transcriptomic Profiling ofFrontiers in plant science · 2021Article
- Proximal and Distal Parts of Sweetpotato Adventitious Roots Display Differences in Root Architecture, Lignin, and Starch Metabolism and Their Developmental Fates.Frontiers in plant science · 2020Article
- Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops.Frontiers in plant science · 2020Review
- Pan- and core- gene association networks: Integrative approaches to understanding biological regulation.PloS one · 2019Article
- Unlocking conserved and diverged metabolic characteristics in cassava carbon assimilation via comparative genomics approach.Scientific reports · 2018Article
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Authors and funding
10 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Development of storage roots is a process associated with a phase change from cell division and elongation to radial growth and accumulation of massive amounts of reserve substances such as starch. Knowledge of the regulation of cassava storage root formation has accumulated over time; however, gene regulation during the initiation and early stage of storage root development is still poorly understood. In this study, transcription profiling of fibrous, intermediate and storage roots at eight weeks old were investigated using a 60-mer-oligo microarray. Transcription and gene expression were found to be the key regulating processes during the transition stage from fibrous to intermediate roots, while homeostasis and signal transduction influenced regulation from intermediate roots to storage roots. Clustering analysis of significant genes and transcription factors (TF) indicated that a number of phytohormone-related TF were differentially expressed; therefore, phytohormone-related genes were assembled into a network of correlative nodes. We propose a model showing the relationship between KNOX1 and phytohormones during storage root initiation. Exogeneous treatment of phytohormones N (6) -benzylaminopurine and 1-Naphthaleneacetic acid were used to induce the storage root initiation stage and to investigate expression patterns of the genes involved in storage root initiation. The results support the hypothesis that phytohormones are acting in concert to regulate the onset of cassava storage root development. Moreover, MeAGL20 is a factor that might play an important role at the onset of storage root initiation when the root tip becomes swollen.
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