Evidence map›Paper›PMID 26116881›Full record

ArticleBiochimica et biophysica acta2015

The two transmembrane helices of CcoP are sufficient for assembly of the cbb3-type heme-copper oxygen reductase from Vibrio cholerae.

Young O Ahn, Hyun Ju Lee, Daniel Kaluka, Syun-Ru Yeh, Denis L Rousseau, Pia Ädelroth, Robert B Gennis

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Applied and environmental microbiology · 2026
    Article
  2. A redox- and proton-coupled inner membrane transporter mediates copper import to the bacterial cytoplasm.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. The structure of the diheme cytochrome cJournal of inorganic biochemistry · 2024
    Article
  4. Article
  5. Article
  6. Mechanism of proton transfer through the KBiochimica et biophysica acta. Bioenergetics · 2018
    Article
  7. The Role of the Regulator Fur in Gene Regulation and Virulence ofFrontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Young O AhnDepartment of Biochemistry, University of Illinois, 600 S. Mathews Street, Urbana, IL 61801, USA.
Hyun Ju LeeDepartment of Biochemistry and Biophysics, Arrhenius Laboratories for Natural Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.
Daniel KalukaDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Syun-Ru YehDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Denis L RousseauDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Pia ÄdelrothDepartment of Biochemistry and Biophysics, Arrhenius Laboratories for Natural Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.
Robert B GennisDepartment of Biochemistry, University of Illinois, 600 S. Mathews Street, Urbana, IL 61801, USA. Electronic address: r-gennis@illinois.edu.
Albert Einstein College of Medicine · USStockholm University · SEUniversity of Illinois Urbana-Champaign · US

Funding

PROTEIN/LIPID INTERACTIONSR01HL016101 · NHLBI · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GENNIS, ROBERT B · 1985 to 2015
$6.8M
Mechanisms of Energy Transduction in Heme-Copper OxidasesR01GM098799 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ROUSSEAU, DENIS L. · 2011 to 2014
$1.8M
PROTEIN/LIPID INTERACTIONSR37HL016101 · NHLBI · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GENNIS, ROBERT B. · 1993 to 2002
$1.5M
Catalytic and Inhibitory Mechanisms in Indoleamine 2,3-dioxygenaseR01GM086482 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI YEH, SYUN-RU · 2010 to 2013
$1.3M
NHLBI NIH HHS R01 HL016101NHLBI NIH HHS R37 HL016101NIGMS NIH HHS R01 GM086482NIGMS NIH HHS R01 GM098799
6 · The paper itself

Abstract

The C-family (cbb3) of heme-copper oxygen reductases are proton-pumping enzymes terminating the aerobic respiratory chains of many bacteria, including a number of human pathogens. The most common form of these enzymes contains one copy each of 4 subunits encoded by the ccoNOQP operon. In the cbb3 from Rhodobacter capsulatus, the enzyme is assembled in a stepwise manner, with an essential role played by an assembly protein CcoH. Importantly, it has been proposed that a transient interaction between the transmembrane domains of CcoP and CcoH is essential for assembly. Here, we test this proposal by showing that a genetically engineered form of cbb3 from Vibrio cholerae (CcoNOQP(X)) that lacks the hydrophilic domain of CcoP, where the two heme c moieties are present, is fully assembled and stable. Single-turnover kinetics of the reaction between the fully reduced CcoNOQP(X) and O2 are essentially the same as the wild type enzyme in oxidizing the 4 remaining redox-active sites. The enzyme retains approximately 10% of the steady state oxidase activity using the artificial electron donor TMPD, but has no activity using the physiological electron donor cytochrome c4, since the docking site for this cytochrome is presumably located on the absent domain of CcoP. Residue E49 in the hydrophobic domain of CcoP is the entrance of the K(C)-channel for proton input, and the E49A mutation in the truncated enzyme further reduces the steady state activity to less than 3%. Hence, the same proton channel is used by both the wild type and truncated enzymes.

Indexed as

Bioenergeticscbb(3)Membrane protein assemblyOxygen reductaseVibrio cholerae

Identifiers

PMID26116881
PMCPMC4547900
OpenAlexW820980007

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.