Evidence map›Paper›PMID 26116671›Full record

ArticleApplied and environmental microbiology2015

AguR, a Transmembrane Transcription Activator of the Putrescine Biosynthesis Operon in Lactococcus lactis, Acts in Response to the Agmatine Concentration.

Daniel M Linares, Beatriz Del Rio, Begoña Redruello, Victor Ladero, M Cruz Martin, Anne de Jong, Oscar P Kuipers, Maria Fernandez, Miguel A Alvarez

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Daniel M LinaresInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.
Beatriz Del RioInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.
Begoña RedruelloInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.
Victor LaderoInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.ORCID http://orcid.org/0000-0002-7613-3745
M Cruz MartinInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.
Anne de JongDepartment of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.
Oscar P KuipersDepartment of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.
Maria FernandezInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.
Miguel A AlvarezInstituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain maag@ipla.csic.es.
Instituto de Productos Lácteos de Asturias · ESUniversity of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dairy industry fermentative processes mostly use Lactococcus lactis as a starter. However, some dairy L. lactis strains produce putrescine, a biogenic amine that raises food safety and spoilage concerns, via the agmatine deiminase (AGDI) pathway. The enzymatic activities responsible for putrescine biosynthesis in this bacterium are encoded by the AGDI gene cluster. The role of the catabolic genes aguB, aguD, aguA, and aguC has been studied, but knowledge regarding the role of aguR (the first gene in the cluster) remains limited. In the present work, aguR was found to be a very low level constitutively expressed gene that is essential for putrescine biosynthesis and is transcribed independently of the polycistronic mRNA encoding the catabolic genes (aguBDAC). In response to agmatine, AguR acts as a transcriptional activator of the aguB promoter (PaguB), which drives the transcription of the aguBDAC operon. Inverted sequences required for PaguB activity were identified by deletion analysis. Further work indicated that AguR is a transmembrane protein which might function as a one-component signal transduction system that senses the agmatine concentration of the medium and, accordingly, regulates the transcription of the aguBDAC operon through a C-terminal cytoplasmic DNA-binding domain typically found in LuxR-like proteins.

Indexed as

Transcription, GeneticAgmatineBiosynthetic PathwaysGene Expression ProfilingGene Expression Regulation, BacterialLactococcus lactisOperonPutrescineTrans-ActivatorsAgmatinePutrescineTrans-Activators

Identifiers

PMID26116671
PMCPMC4542264
OpenAlexW2134670758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.