Evidence map›Paper›PMID 26116024›Full record

ArticleJournal of experimental botany2015

AtROS1 overexpression provides evidence for epigenetic regulation of genes encoding enzymes of flavonoid biosynthesis and antioxidant pathways during salt stress in transgenic tobacco.

Poonam Bharti, Monika Mahajan, Ajay K Vishwakarma, Jyoti Bhardwaj, Sudesh Kumar Yadav

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
12.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 127 citations in OpenAlex.

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  15. Functional identification of DNA demethylase geneFrontiers in plant science · 2024
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  16. International journal of molecular sciences · 2023
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  17. Analysis of the Antioxidant Mechanism ofAntioxidants (Basel, Switzerland) · 2022
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  18. Review
  19. DNA Methylation in Plant Responses and Adaption to Abiotic Stresses.International journal of molecular sciences · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Poonam BhartiBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur 176061, Himanchal Pradesh, India.
Monika MahajanBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur 176061, Himanchal Pradesh, India.
Ajay K VishwakarmaBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur 176061, Himanchal Pradesh, India.
Jyoti BhardwajBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur 176061, Himanchal Pradesh, India.
Sudesh Kumar YadavBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur 176061, Himanchal Pradesh, India skyt@rediffmail.com.
Institute of Himalayan Bioresource Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, epigenetic changes have been identified as regulators of developmental events during normal growth as well as environmental stress exposures. Flavonoid biosynthetic and antioxidant pathways play a significant role in plant defence during their exposure to environmental cues. The aim of this study was to unravel whether genes encoding enzymes of flavonoid biosynthetic and antioxidant pathways are under epigenetic regulation, particularly DNA methylation, during salt stress. For this, a repressor of silencing from Arabidopsis, AtROS1, was overexpressed in transgenic tobacco. Generated transgenics were evaluated to examine the influence of AtROS1 on methylation status of promoters as well as on coding regions of genes encoding enzymes of flavonoids biosynthesis and antioxidant pathways. Overexpression of AtROS1 increases the demethylation levels of both promoters as well as coding regions of genes encoding chalcone synthase, chalcone isomerase, flavanone 3-hydroxylase, flavonol synthase, dihydroflavonol 4-reductase, and anthocyanidin synthase of the flavonoid biosynthetic pathway, and glutathione S-transferase, ascorbate peroxidase, glutathione peroxidase, and glutathione reductase of the antioxidant pathway during control conditions. The level of demethylation was further increased at promoters as well as coding regions of these genes during salt-stress conditions. Transgenic tobacco overexpressing AtROS1 showed tolerance to salt stress that could have been due to the higher expression levels of the genes encoding enzymes of the flavonoid biosynthetic and antioxidant pathways. This is the first comprehensive study documenting the epigenetic regulation of flavonoid biosynthetic and antioxidant pathways during salt-stress exposure of plants.

Indexed as

Epigenesis, GeneticGene Expression Regulation, PlantAntioxidantsArabidopsisArabidopsis ProteinsFlavonoidsNicotianaNuclear ProteinsPlants, Genetically ModifiedSodium ChlorideStress, PhysiologicalAntioxidantsArabidopsis ProteinsFlavonoidsNuclear ProteinsROS1 protein, ArabidopsisSodium Chloridecoding regionsEpigenetic regulationmethylation statuspromotersROS1 overexpressionsalt stresstobacco.

Identifiers

PMID26116024
PMCPMC4566984
OpenAlexW2173784328

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.