Evidence map›Paper›PMID 26115006›Full record

ArticleBiochemistry2015

Structural and Biochemical Characterization of AidC, a Quorum-Quenching Lactonase with Atypical Selectivity.

Romila Mascarenhas, Pei W Thomas, Chun-Xiang Wu, Boguslaw P Nocek, Quyen Q Hoang, Dali Liu, Walter Fast

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact, top 82% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 0 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Romila Mascarenhas§Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States.
Pei W Thomas
Chun-Xiang Wu∥Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, United States.
Boguslaw P Nocek⊥Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439, United States.
Quyen Q Hoang∥Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, United States.
Dali Liu§Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States.
Walter Fast
Indiana University – Purdue University Indianapolis · USLoyola University Chicago · USArgonne National Laboratory · US

Funding

Structure and Function of the Parkinson's disease associated protein LRRK2R01GM111639 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI HOANG, QUYEN QUOC · 2015 to 2019
$1.6M
NIGMS NIH HHS GM111639NIGMS NIH HHS R01 GM111639
6 · The paper itself

Abstract

Quorum-quenching catalysts are of interest for potential application as biochemical tools for interrogating interbacterial communication pathways, as antibiofouling agents, and as anti-infective agents in plants and animals. Herein, the structure and function of AidC, an N-acyl-l-homoserine lactone (AHL) lactonase from Chryseobacterium, is characterized. Steady-state kinetics show that zinc-supplemented AidC is the most efficient wild-type quorum-quenching enzymes characterized to date, with a kcat/KM value of approximately 2 × 10(6) M(-1) s(-1) for N-heptanoyl-l-homoserine lactone. The enzyme has stricter substrate selectivity and significantly lower KM values (ca. 50 μM for preferred substrates) compared to those of typical AHL lactonases (ca. >1 mM). X-ray crystal structures of AidC alone and with the product N-hexanoyl-l-homoserine were determined at resolutions of 1.09 and 1.67 Å, respectively. Each structure displays as a dimer, and dimeric oligiomerization was also observed in solution by size-exclusion chromatography coupled with multiangle light scattering. The structures reveal two atypical features as compared to previously characterized AHL lactonases: a "kinked" α-helix that forms part of a closed binding pocket that provides affinity and enforces selectivity for AHL substrates and an active-site His substitution that is usually found in a homologous family of phosphodiesterases. Implications for the catalytic mechanism of AHL lactonases are discussed.

Indexed as

Carboxylic Ester HydrolasesCatalytic DomainChryseobacteriumCrystallography, X-RayModels, MolecularProtein ConformationProtein MultimerizationQuorum SensingSubstrate SpecificityCarboxylic Ester HydrolasesN-acyl homoserine lactonase

Identifiers

PMID26115006
PMCPMC4681436
OpenAlexW2339779723

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.