Evidence map›Paper›PMID 26114960›Full record

ArticlePLoS genetics2015

Silencing of DNase Colicin E8 Gene Expression by a Complex Nucleoprotein Assembly Ensures Timely Colicin Induction.

Simona Kamenšek, Douglas F Browning, Zdravko Podlesek, Stephen J W Busby, Darja Žgur-Bertok, Matej Butala

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Fe-S cluster homeostasis and beyond: The multifaceted roles of IscR.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
  2. Homodimerization and heterodimerization requirements ofCanadian journal of microbiology · 2021
    Article
  3. Article
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  5. Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Simona KamenšekDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Douglas F BrowningInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Zdravko PodlesekDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Stephen J W BusbyInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Darja Žgur-BertokDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Matej ButalaDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
University of Ljubljana · SIUniversity of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J006076/1
6 · The paper itself

Abstract

Colicins are plasmid-encoded narrow spectrum antibiotics that are synthesized by strains of Escherichia coli and govern intraspecies competition. In a previous report, we demonstrated that the global transcriptional factor IscR, co dependently with the master regulator of the DNA damage response, LexA, delays induction of the pore forming colicin genes after SOS induction. Here we show that IscR is not involved in the regulation of nuclease colicins, but that the AsnC protein is. We report that AsnC, in concert with LexA, is the key controller of the temporal induction of the DNA degrading colicin E8 gene (cea8), after DNA damage. We demonstrate that a large AsnC nucleosome-like structure, in conjunction with two LexA molecules, prevent cea8 transcription initiation and that AsnC binding activity is directly modulated by L asparagine. We show that L-asparagine is an environmental factor that has a marked impact on cea8 promoter regulation. Our results show that AsnC also modulates the expression of several other DNase and RNase colicin genes but does not substantially affect pore-forming colicin K gene expression. We propose that selection pressure has "chosen" highly conserved regulators to control colicin expression in E. coli strains, enabling similar colicin gene silencing among bacteria upon exchange of colicinogenic plasmids.

Indexed as

Gene Expression Regulation, BacterialAsparagineBacterial ProteinsColicinsEscherichia coliEscherichia coli ProteinsLexA Repressor ProteinNucleoproteinsPromoter Regions, GeneticSerine EndopeptidasesSOS Response, GeneticsTrans-ActivatorsTranscription FactorsAsnC protein, E coliAsparagineBacterial ProteinsColicinsEscherichia coli ProteinsimmE8 protein, E coliIscR protein, E coliLexA Repressor ProteinNucleoproteinsSerine EndopeptidasesTrans-ActivatorsTranscription Factors

Identifiers

PMID26114960
PMCPMC4482635
OpenAlexW763177258

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.