Evidence map›Paper›PMID 26114889›Full record

ArticleThe ISME journal2016

Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation.

Charles Pepe-Ranney, Chantal Koechli, Ruth Potrafka, Cheryl Andam, Erin Eggleston, Ferran Garcia-Pichel, Daniel H Buckley

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 130 citations in OpenAlex.

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  17. Microbial Biogeochemical Cycling of Nitrogen in Arid Ecosystems.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  18. Article
  19. Article
  20. Dynamics ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Charles Pepe-RanneyDepartment of Crop and Soil Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, USA.
Chantal KoechliDepartment of Microbiology, Cornell University, Ithaca, NY, USA.
Ruth PotrafkaSchool of Life Sciences, Arizona State University, Tempe, AZ, USA.
Cheryl AndamDepartment of Microbiology, Cornell University, Ithaca, NY, USA.
Erin EgglestonDepartment of Microbiology, Cornell University, Ithaca, NY, USA.
Ferran Garcia-PichelSchool of Life Sciences, Arizona State University, Tempe, AZ, USA.
Daniel H BuckleyDepartment of Crop and Soil Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, USA.
Cornell University · USArizona State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological soil crusts (BSCs) are key components of ecosystem productivity in arid lands and they cover a substantial fraction of the terrestrial surface. In particular, BSC N2-fixation contributes significantly to the nitrogen (N) budget of arid land ecosystems. In mature crusts, N2-fixation is largely attributed to heterocystous cyanobacteria; however, early successional crusts possess few N2-fixing cyanobacteria and this suggests that microorganisms other than cyanobacteria mediate N2-fixation during the critical early stages of BSC development. DNA stable isotope probing with (15)N2 revealed that Clostridiaceae and Proteobacteria are the most common microorganisms that assimilate (15)N2 in early successional crusts. The Clostridiaceae identified are divergent from previously characterized isolates, though N2-fixation has previously been observed in this family. The Proteobacteria identified share >98.5% small subunit rRNA gene sequence identity with isolates from genera known to possess diazotrophs (for example, Pseudomonas, Klebsiella, Shigella and Ideonella). The low abundance of these heterotrophic diazotrophs in BSCs may explain why they have not been characterized previously. Diazotrophs have a critical role in BSC formation and characterization of these organisms represents a crucial step towards understanding how anthropogenic change will affect the formation and ecological function of BSCs in arid ecosystems.

Indexed as

Nitrogen FixationSoil MicrobiologyAutotrophic ProcessesBacteriaEcosystemGeologic SedimentsHeterotrophic ProcessesMolecular Sequence DataNitrogenPhylogenyNitrogen

Identifiers

PMID26114889
PMCPMC4737922
OpenAlexW1490586992

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.