ArticleBioMed research international2015
A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene.
Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration.Cell reports · 2019Article
- Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates.Life (Basel, Switzerland) · 2017Article
- A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata.BMC bioinformatics · 2016Article
- Regulation of Expression and Evolution of Genes in Plastids of Rhodophytic Branch.Life (Basel, Switzerland) · 2016Article
- Algorithms for reconstruction of chromosomal structures.BMC bioinformatics · 2016Article
- Molecular Phylogenetics 2016.BioMed research international · 2016Article
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Authors and funding
3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
We report the database of plastid protein families from red algae, secondary and tertiary rhodophyte-derived plastids, and Apicomplexa constructed with the novel method to infer orthology. The families contain proteins with maximal sequence similarity and minimal paralogous content. The database contains 6509 protein entries, 513 families and 278 nonsingletons (from which 230 are paralog-free, and among the remaining 48, 46 contain at maximum two proteins per species, and 2 contain at maximum three proteins per species). The method is compared with other approaches. Expression regulation of the moeB gene is studied using this database and the model of RNA polymerase competition. An analogous database obtained for green algae and their symbiotic descendants, and applications based on it are published earlier.
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