ArticleFrontiers in plant science2015
Dynamic transcriptional profiling provides insights into tuberous root development in Rehmannia glutinosa.
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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24 citing papers in PubMed, 33 citations in OpenAlex.
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- Integrative Analysis of the Transcriptome and Metabolome Reveals the Developmental Mechanisms and Metabolite Biosynthesis of the Tuberous Roots ofMolecules (Basel, Switzerland) · 2023Article
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- The Effects of NAA on the Tuberous Root Yield and Quality ofCurrent issues in molecular biology · 2022Article
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- Roles of Abscisic Acid and Gibberellins in Stem/Root Tuber Development.International journal of molecular sciences · 2022Review
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- Molecular Regulation of Catalpol and Acteoside Accumulation in Radial Striation and non-Radial Striation ofInternational journal of molecular sciences · 2018Article
- Metabolite accumulation and metabolic network in developing roots of Rehmannia glutinosa reveals its root developmental mechanism and quality.Scientific reports · 2018Article
- Differential proteomic analysis of replanted Rehmannia glutinosa roots by iTRAQ reveals molecular mechanisms for formation of replant disease.BMC plant biology · 2017Article
- Transcriptome Analysis of Salicylic Acid Treatment inFrontiers in plant science · 2017Article
- Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
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Authors and funding
10 authors at 1 institution in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Rehmannia glutinosa, an herb of the Scrophulariaceae family, is widely cultivated in the Northern part of China. The tuberous root has well-known medicinal properties; however, yield and quality are threatened by abiotic and biotic stresses. Understanding the molecular process of tuberous root development may help identify novel targets for its control. In the present study, we used Illumina sequencing and de novo assembly strategies to obtain a reference transcriptome that is relevant to tuberous root development. We then conducted RNA-seq quantification analysis to determine gene expression profiles of the adventitious root (AR), thickening adventitious root (TAR), and the developing tuberous root (DTR). Expression profiling identified a total of 6794 differentially expressed unigenes during root development. Bioinformatics analysis and gene expression profiling revealed changes in phenylpropanoid biosynthesis, starch and sucrose metabolism, and plant hormone biosynthesis during root development. Moreover, we identified and allocated putative functions to the genes involved in tuberous root development, including genes related to major carbohydrate metabolism, hormone metabolism, and transcription regulation. The present study provides the initial description of gene expression profiles of AR, TAR, and DTR, which facilitates identification of genes of interest. Moreover, our work provides insights into the molecular mechanisms underlying tuberous root development and may assist in the design and development of improved breeding schemes for different R. glutinosa varieties through genetic manipulation.
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