Evidence map›Paper›PMID 26113502›Full record

ArticleEye (London, England)2015

Diverse clinical phenotypes associated with a nonsense mutation in FAM161A.

A M Rose, P Sergouniotis, G Alfano, N Muspratt-Tucker, S Barton, A T Moore, G Black, S S Bhattacharya, A R Webster

Open access · bronzeAbstract read
In one paragraph

Article in Eye (London, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  3. Ultra-widefield fundus autofluorescence imaging in patients with autosomal recessive retinitis pigmentosa reveals a genotype-phenotype correlation.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

A M RoseDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
P SergouniotisDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
G AlfanoDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
N Muspratt-TuckerDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
S BartonDepartment of Genetic Medicine, Central Manchester University Hospitals, Manchester, UK.
A T MooreDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
G BlackDepartment of Genetic Medicine, Central Manchester University Hospitals, Manchester, UK.
S S BhattacharyaDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
A R WebsterDepartment of Genetics, UCL Institute of Ophthalmology, London, UK.
University College London · GBUniversity of Manchester · GBMoorfields Eye Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeMutations in the FAM161A gene have been reported in association with autosomal recessive retinitis pigmentosa (arRP) in several ethnic populations. This study aimed to assess the prevalence of FAM161A-related retinopathy in a British cohort and to characterise the phenotype associated with mutations in this gene.

methodsThe FAM161A coding region and intron-exon boundaries were screened by Sanger sequencing in 120 retinitis pigmentosa (RP) patients (with likely autosomal recessive inheritance) in whom mutations in other known major RP genes have been ruled out by commercially available testing. Homozygosity mapping was performed in one consanguineous family, and high-throughput sequencing of candidate genes was performed to identify disease-associated changes. Clinical assessment of affected individuals included perimetry testing, fundus autofluorescence imaging, and optical coherence tomography.

resultsTwo patients of British origin with a homozygous mutation in FAM161A (c.1309A>T, p.Arg437*) were identified by Sanger sequencing. Homozygosity mapping and subsequent high-throughput sequencing analysis identified a further family of Pakistani origin with the same genotype. Clinical examination of affected members of these families revealed that this mutation was associated with a diverse clinical phenotype, ranging from mild disease with preservation of central acuity to severe visual impairment.

conclusionsHomozygosity for the c.1309A>T, p.Arg437* variant in FAM161A is a relatively common cause of arRP. The mutation occurs in diverse ethnic populations, associated with typical retinitis pigmentosa with disease onset usually in the second or third decade of life.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAdultAsian PeopleCodon, NonsenseCohort StudiesEye ProteinsFemaleGenes, RecessiveHaplotypesHomozygoteHumansMaleMiddle AgedPedigreePrevalenceCodon, NonsenseEye ProteinsFAM161A protein, human

Identifiers

PMID26113502
PMCPMC4565954
OpenAlexW836609260

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.