Evidence map›Paper›PMID 26112675›Full record

ArticleBMC plant biology2015

A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight.

Yuxuan Hou, Jiehua Qiu, Xiaohong Tong, Xiangjin Wei, Babi R Nallamilli, Weihuai Wu, Shiwen Huang, Jian Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  13. A Phosphoproteomics Study of the SoybeanFrontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yuxuan HouChina National Rice Research Institute, Hangzhou, 311400, China. houyuxuan@caas.cn.
Jiehua QiuChina National Rice Research Institute, Hangzhou, 311400, China. qjh360@qq.com.
Xiaohong TongChina National Rice Research Institute, Hangzhou, 311400, China. tongxiaohong@caas.cn.
Xiangjin WeiChina National Rice Research Institute, Hangzhou, 311400, China. weixiangjin@caas.cn.
Babi R NallamilliDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, 30322, U.S.A.. babi.nallamilli@emory.edu.
Weihuai WuHainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, 571101, China. weihuaiwu2002@163.com.
Shiwen HuangChina National Rice Research Institute, Hangzhou, 311400, China. huangshiwen@caas.cn.
Jian ZhangChina National Rice Research Institute, Hangzhou, 311400, China. zhangjian@caas.cn.
China National Rice Research Institute · CNChinese Academy of Tropical Agricultural Sciences · CNEmory University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRice is a major crop worldwide. Bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae (Xoo) has become one of the most devastating diseases for rice. It has been clear that phosphorylation plays essential roles in plant disease resistance. However, the role of phosphorylation is poorly understood in rice-Xoo system. Here, we report the first study on large scale enrichment of phosphopeptides and identification of phosphosites in rice before and 24 h after Xoo infection.

resultsWe have successfully identified 2367 and 2223 phosphosites on 1334 and 1297 representative proteins in 0 h and 24 h after Xoo infection, respectively. A total of 762 differentially phosphorylated proteins, including transcription factors, kinases, epi-genetic controlling factors and many well-known disease resistant proteins, are identified after Xoo infection suggesting that they may be functionally relevant to Xoo resistance. In particular, we found that phosphorylation/dephosphorylation might be a key switch turning on/off many epi-genetic controlling factors, including HDT701, in response to Xoo infection, suggesting that phosphorylation switch overriding the epi-genetic regulation may be a very universal model in the plant disease resistance pathway.

conclusionsThe phosphosites identified in this study would be a big complementation to our current knowledge in the phosphorylation status and sites of rice proteins. This research represents a substantial advance in understanding the rice phosphoproteome as well as the mechanism of rice bacterial blight resistance.

Indexed as

Disease ResistanceOryzaPhosphoproteinsPhosphorylationPlant DiseasesPlant ProteinsProteomeXanthomonasPhosphoproteinsPlant ProteinsProteome

Identifiers

PMID26112675
PMCPMC4482044
OpenAlexW1576565370

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.