Evidence map›Paper›PMID 26112186›Full record

ArticleNature communications2015

Glycan complexity dictates microbial resource allocation in the large intestine.

Artur Rogowski, Jonathon A Briggs, Jennifer C Mortimer, Theodora Tryfona, Nicolas Terrapon, Elisabeth C Lowe, Arnaud Baslé, Carl Morland, Alison M Day, Hongjun Zheng and 9 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 223 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
223citing papers in PubMed, 1 pooled it
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

223 citing papers in PubMed, 1 synthesis or guideline pooled it, 410 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Discovery of a secretedGut microbes · 2026
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  8. Extracellular metabolite production byApplied and environmental microbiology · 2026
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  9. Review
  10. Article
  11. Article
  12. Article
  13. A system for transferring large genetic loci inApplied and environmental microbiology · 2026
    Article
  14. Article
  15. Article
  16. Enzymatic Production of Prebiotic Xylooligosaccharides Using aJournal of agricultural and food chemistry · 2026
    Article
  17. Article
  18. Review
  19. Article
  20. Recent progress in the microbial production of Xylanase.World journal of microbiology & biotechnology · 2025
    Review

163 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Artur RogowskiInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Jonathon A BriggsInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Jennifer C MortimerDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK.
Theodora TryfonaDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK.
Nicolas TerraponArchitecture et Fonction des Macromolécules Biologiques (AFMB), UMR 7257 CNRS, Université Aix-Marseille, 163 Avenue de Luminy, 13288 Marseille, France.
Elisabeth C LoweInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Arnaud BasléInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Carl MorlandInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Alison M DayInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Hongjun ZhengInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Theresa E RogersDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Paul ThompsonInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Alastair R HawkinsInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Madhav P YadavUnited States Department of Agriculture- Agricultural Research Service, Eastern Regional Research Center, 600 East Mermaid Lane, Wyndmoor, Pennsylvania 19038, USA.
Bernard Henrissat1] Architecture et Fonction des Macromolécules Biologiques (AFMB), UMR 7257 CNRS, Université Aix-Marseille, 163 Avenue de Luminy, 13288 Marseille, France [2] Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Paul DupreeDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK.
Harry J GilbertInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
David N BolamInstitute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Newcastle University · GBUniversity of Cambridge · GBArchitecture et Fonction des Macromolécules Biologiques · FRUniversity of Michigan–Ann Arbor · USUnited States Department of Agriculture · US

Funding

Biotechnology and Biological Sciences Research Council BB/F014163/1Biotechnology and Biological Sciences Research Council BB/G016186/1Biotechnology and Biological Sciences Research Council BB/G016240/1Wellcome Trust 097907Wellcome Trust WT097907AIA
6 · The paper itself

Abstract

The structure of the human gut microbiota is controlled primarily through the degradation of complex dietary carbohydrates, but the extent to which carbohydrate breakdown products are shared between members of the microbiota is unclear. We show here, using xylan as a model, that sharing the breakdown products of complex carbohydrates by key members of the microbiota, such as Bacteroides ovatus, is dependent on the complexity of the target glycan. Characterization of the extensive xylan degrading apparatus expressed by B. ovatus reveals that the breakdown of the polysaccharide by the human gut microbiota is significantly more complex than previous models suggested, which were based on the deconstruction of xylans containing limited monosaccharide side chains. Our report presents a highly complex and dynamic xylan degrading apparatus that is fine-tuned to recognize the different forms of the polysaccharide presented to the human gut microbiota.

Indexed as

Bacterial ProteinsBacteroidesBifidobacteriumGene Expression Regulation, BacterialGenomicsHumansProtein TransportXylansZea maysBacterial ProteinsXylans

Identifiers

PMID26112186
PMCPMC4491172
OpenAlexW1904804250

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.