ArticlePlant physiology2015
Photosynthetic Genes and Genes Associated with the C4 Trait in Maize Are Characterized by a Unique Class of Highly Regulated Histone Acetylation Peaks on Upstream Promoters.
Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Investigating theProceedings of the National Academy of Sciences of the United States of America · 2024Article
- Investigating thebioRxiv : the preprint server for biology · 2024Article
- Article
- Network and epigenetic characterization of subsets of genes specifically expressed in maize bundle sheath cells.Computational and structural biotechnology journal · 2022Article
- Histone acetyltransferase TaHAG1 acts as a crucial regulator to strengthen salt tolerance of hexaploid wheat.Plant physiology · 2021Article
- Epigenomic landscape and epigenetic regulation in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Formaldehyde-assisted isolation of regulatory DNA elements from Arabidopsis leaves.Nature protocols · 2020Article
- Targeted misexpression of NAC052, acting in H3K4 demethylation, alters leaf morphological and anatomical traits in Arabidopsis thaliana.Journal of experimental botany · 2020Article
- Emerging Roles and Landscape of Translating mRNAs in Plants.Frontiers in plant science · 2017Review
- Proteomics analysis reveals a dynamic diurnal pattern of photosynthesis-related pathways in maize leaves.PloS one · 2017Article
- Histone Acetylation Modifications Affect Tissue-Dependent Expression of Poplar Homologs of CFrontiers in plant science · 2017Article
- Analysis of gene expression and histone modification between C4 and non-C4 homologous genes of PPDK and PCK in maize.Photosynthesis research · 2016Article
- Chromatin and Epigenetics.Plant physiology · 2015Article
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Authors and funding
3 authors.
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Abstract
Histone modifications contribute to gene regulation in eukaryotes. We analyzed genome-wide histone H3 Lysine (Lys) 4 trimethylation and histone H3 Lys 9 acetylation (two modifications typically associated with active genes) in meristematic cells at the base and expanded cells in the blade of the maize (Zea mays) leaf. These data were compared with transcript levels of associated genes. For individual genes, regulations (fold changes) of histone modifications and transcript levels were much better correlated than absolute intensities. When focusing on regulated histone modification sites, we identified highly regulated secondary H3 Lys 9 acetylation peaks on upstream promoters (regulated secondary upstream peaks [R-SUPs]) on 10% of all genes. R-SUPs were more often found on genes that were up-regulated toward the blade than on down-regulated genes and specifically, photosynthetic genes. Among those genes, we identified six genes encoding enzymes of the C4 cycle and a significant enrichment of genes associated with the C4 trait derived from transcriptomic studies. On the DNA level, R-SUPs are frequently associated with ethylene-responsive elements. Based on these data, we suggest coevolution of epigenetic promoter elements during the establishment of C4 photosynthesis.
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