Evidence map›Paper›PMID 26111162›Full record

ArticlePloS one2015

Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation.

Darcy Young, James Rice, Rachael Martin, Erika Lindquist, Anna Lipzen, Igor Grigoriev, David Hibbett

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 62 citations in OpenAlex.

  1. Integrative Genomic and Transcriptomic Analysis of White-Rot FungiJournal of fungi (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Whole Genome Identification and Biochemical Characteristics of theInternational journal of molecular sciences · 2024
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Mycoremediation: Expunging environmental pollutants.Biotechnology reports (Amsterdam, Netherlands) · 2020
    Review
  9. Draft Genome Sequence ofGenome announcements · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Darcy YoungBiology Department, Clark University, Worcester, MA, United States of America.
James RiceSchool of Engineering, Brown University, Providence, RI, United States of America.
Rachael MartinBiology Department, Clark University, Worcester, MA, United States of America.
Erika LindquistJoint Genome Institute, Walnut Creek, CA, United States of America.
Anna LipzenJoint Genome Institute, Walnut Creek, CA, United States of America.
Igor GrigorievJoint Genome Institute, Walnut Creek, CA, United States of America.
David HibbettBiology Department, Clark University, Worcester, MA, United States of America.
Clark University · USJoint Genome Institute · USBrown University · US

Funding

Vapor Pressures and Thermodynamic Properties of Complex Organic MixturesP42ES013660 · NIEHS · BROWN UNIVERSITY · PI BOEKELHEIDE, KIM · 2005 to 2020
$37.7M
NIEHS NIH HHS P42 ES013660NIEHS NIH HHS P42ES013660
6 · The paper itself

Abstract

Fungal lignocellulolytic enzymes are promising agents for oxidizing pollutants. This study investigated degradation of Number 6 "Bunker C" fuel oil compounds by the white-rot fungi Irpex lacteus, Trichaptum biforme, Phlebia radiata, Trametes versicolor, and Pleurotus ostreatus (Basidiomycota, Agaricomycetes). Averaging across all studied species, 98.1%, 48.6%, and 76.4% of the initial Bunker C C10 alkane, C14 alkane, and phenanthrene, respectively were degraded after 180 days of fungal growth on pine media. This study also investigated whether Bunker C oil induces changes in gene expression in the white-rot fungus Punctularia strigosozonata, for which a complete reference genome is available. After 20 days of growth, a monokaryon P. strigosozonata strain degraded 99% of the initial C10 alkane in both pine and aspen media but did not affect the amounts of the C14 alkane or phenanthrene. Differential gene expression analysis identified 119 genes with ≥ log2(2-fold) greater expression in one or more treatment comparisons. Six genes were significantly upregulated in media containing oil; these genes included three enzymes with potential roles in xenobiotic biotransformation. Carbohydrate metabolism genes showing differential expression significantly accumulated transcripts on aspen vs. pine substrates, perhaps reflecting white-rot adaptations to growth on hardwood substrates. The mechanisms by which P. strigosozonata may degrade complex oil compounds remain obscure, but degradation results of the 180-day cultures suggest that diverse white-rot fungi have promise for bioremediation of petroleum fuels.

Indexed as

Biodegradation, EnvironmentalBasidiomycotaCarbohydrate MetabolismEnvironmental PollutantsFuel OilsFungiGene Expression Regulation, FungalHumansOxidantsEnvironmental PollutantsFuel OilsOxidants

Identifiers

PMID26111162
PMCPMC4482389
OpenAlexW2134354366

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.