Evidence map›Paper›PMID 26110572›Full record

ArticleOncotarget2015

Gene expression profiling signatures for the diagnosis and prevention of oral cavity carcinogenesis-genome-wide analysis using RNA-seq technology.

Xiao-Han Tang, Alison M Urvalek, Kwame Osei-Sarfo, Tuo Zhang, Theresa Scognamiglio, Lorraine J Gudas

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xiao-Han TangDepartment of Pharmacology, Weill Cornell Medical College, New York, NY, USA.
Alison M UrvalekDepartment of Pharmacology, Weill Cornell Medical College, New York, NY, USA.
Kwame Osei-SarfoDepartment of Pharmacology, Weill Cornell Medical College, New York, NY, USA.
Tuo ZhangGenomics Resources Core Facility, Weill Cornell Medical College, New York, NY, USA.
Theresa ScognamiglioDepartment of Pathology, Weill Cornell Medical College, New York, NY, USA.
Lorraine J GudasDepartment of Pharmacology, Weill Cornell Medical College, New York, NY, USA.
Cornell University · US

Funding

CANCER PHARMACOLOGYT32CA062948 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LORRAINE J GUDAS · 1994 to 2026
$12.1M
SQUAMOUS CELL CARCINOMAS - EFFECTS OF RETINOIDSR01DE010389 · NIDCR · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUDAS, LORRAINE J · 1992 to 2014
$5.2M
Diet and Alcohol Induced Epigenetic Changes in Oral Cavity Carcinogenesis ModelR01AA018332 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUDAS, LORRAINE J · 2010 to 2014
$2.1M
Molecular Analysis of Alcohol Effects on Human Oral Epithelium Cells' EpigenomeF32AA021045 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI URVALEK, ALISON · 2011 to 2013
$101k
NCI NIH HHS T32 CA062948NIAAA NIH HHS F32 AA021045NIAAA NIH HHS F32-AA021045NIAAA NIH HHS R01 AA018332NIAAA NIH HHS R01AA018332NIDCR NIH HHS R01 DE010389
6 · The paper itself

Abstract

We compared the changes in global gene expression between an early stage (the termination of the carcinogen treatment and prior to the appearance of frank tumors) and a late stage (frank squamous cell carcinoma (SCC)) of tongue carcinogenesis induced by the carcinogen 4-nitroquinoline 1-oxide (4-NQO) in a mouse model of human oral cavity and esophageal squamous cell carcinoma. Gene ontology and pathway analyses show that increases in "cell cycle progression" and "degradation of basement membrane and ECM pathways" are early events during SCC carcinogenesis and that changes in these pathways are even greater in the actual tumors. Myc, NFκB complex (NFKB1/RELA), and FOS transcription networks are the major transcriptional networks induced in early stage tongue carcinogenesis. Decreases in metabolism pathways, such as in "tricarboxylic acid cycle" and "oxidative phosphorylation", occurred only in the squamous cell carcinomas and not in the early stages of carcinogenesis. We detected increases in ALDH1A3, PTGS2, and KRT1 transcripts in both the early and late stages of carcinogenesis. The identification of the transcripts and pathways that change at an early stage of carcinogenesis provides potentially useful information for early diagnosis and for prevention strategies for human tongue squamous cell carcinomas.

Indexed as

Gene Expression Regulation, Neoplastic4-Nitroquinoline-1-oxideAnimalsBiomarkers, TumorCarcinogenesisCarcinogensCarcinoma, Squamous CellCell CycleDatabases, GeneticEsophageal NeoplasmsFemaleGene Expression ProfilingGenome-Wide Association StudyHumansMiceMice, Inbred C57BL4-Nitroquinoline-1-oxide4-nitroquinolone-1-oxideBiomarkers, TumorCarcinogensQuinolonescancer diagnosisRNA-seqsquamous cell carcinomatongue lesions

Identifiers

PMID26110572
PMCPMC4695195
OpenAlexW1896312477

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.