Evidence map›Paper›PMID 26110556›Full record

ArticleACS chemical biology2015

Mechanism of Inactivation of GABA Aminotransferase by (E)- and (Z)-(1S,3S)-3-Amino-4-fluoromethylenyl-1-cyclopentanoic Acid.

Hyunbeom Lee, Hoang V Le, Rui Wu, Emma Doud, Ruslan Sanishvili, John F Kellie, Phillip D Compton, Boobalan Pachaiyappan, Dali Liu, Neil L Kelleher and 1 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Synthesis of (2The Journal of organic chemistry · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Rational Design, Synthesis, and Mechanism of (3Journal of the American Chemical Society · 2022
    Article
  7. Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Hyunbeom LeeDepartments of Chemistry and Molecular Biosciences, Chemistry of Life Processes Institute, and the Center for Molecular Innovation and Drug Discovery, Northwestern University , Evanston, Illinois 60208, United States.
Hoang V LeDepartments of Chemistry and Molecular Biosciences, Chemistry of Life Processes Institute, and the Center for Molecular Innovation and Drug Discovery, Northwestern University , Evanston, Illinois 60208, United States.
Rui WuDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Emma DoudDepartments of Chemistry and Molecular Biosciences, and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Ruslan SanishviliX-ray Science Division, Advanced Photon Source, Argonne National Laboratory , Lemont, Illinois 60439, United States.
John F KellieDepartments of Chemistry and Molecular Biosciences, and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Phillip D ComptonDepartments of Chemistry and Molecular Biosciences, and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Boobalan PachaiyappanDepartments of Chemistry and Molecular Biosciences, Chemistry of Life Processes Institute, and the Center for Molecular Innovation and Drug Discovery, Northwestern University , Evanston, Illinois 60208, United States.
Dali LiuDepartment of Chemistry and Biochemistry, Loyola University Chicago , Chicago, Illinois 60660, United States.
Neil L KelleherDepartments of Chemistry and Molecular Biosciences, and the Proteomics Center of Excellence, Northwestern University , Evanston, Illinois 60208, United States.
Richard B SilvermanDepartments of Chemistry and Molecular Biosciences, Chemistry of Life Processes Institute, and the Center for Molecular Innovation and Drug Discovery, Northwestern University , Evanston, Illinois 60208, United States.
Northwestern University · USLoyola University Chicago · USArgonne National Laboratory · US

Funding

New Inactivators of GABA Aminotransferase for Addiction and EpilepsyR01DA030604 · NIDA · NORTHWESTERN UNIVERSITY · PI SILVERMAN, RICHARD B · 2011 to 2020
$4.0M
Mass Spectrometric Studies of Thiotemplate BiosynthesisR01GM067725 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2013
$3.0M
Mechanism-Based &Structure-Based Inhibitors of GABA-ATR01GM066132 · NIGMS · NORTHWESTERN UNIVERSITY · PI SILVERMAN, RICHARD B · 2004 to 2007
$1.1M
NIDA NIH HHS DA030604NIDA NIH HHS R01 DA030604NIGMS NIH HHS GM066132NIGMS NIH HHS GM067725NIGMS NIH HHS R01 GM066132NIGMS NIH HHS R01 GM067725
6 · The paper itself

Abstract

When γ-aminobutyric acid (GABA), the major inhibitory neurotransmitter in the mammalian central nervous system, falls below a threshold level, seizures occur. One approach to raise GABA concentrations is to inhibit GABA aminotransferase (GABA-AT), a pyridoxal 5'-phosphate-dependent enzyme that degrades GABA. We have previously developed (1S,3S)-3-amino-4-difluoromethylene-1-cyclopentanoic acid (CPP-115), which is 186 times more efficient in inactivating GABA-AT than vigabatrin, the only FDA-approved inactivator of GABA-AT. We also developed (E)- and (Z)-(1S,3S)-3-amino-4-fluoromethylenyl-1-cyclopentanoic acid (1 and 2, respectively), monofluorinated analogs of CPP-115, which are comparable to vigabatrin in inactivating GABA-AT. Here, we report the mechanism of inactivation of GABA-AT by 1 and 2. Both produce a metabolite that induces disruption of the Glu270-Arg445 salt bridge to accommodate interaction between the metabolite formyl group and Arg445. This is the second time that Arg445 has interacted with a ligand and is involved in GABA-AT inactivation, thereby confirming the importance of Arg445 in future inactivator design.

Indexed as

4-Aminobutyrate TransaminaseAnimalsCrystallography, X-RayEnzyme ActivationEnzyme InhibitorsModels, MolecularProlineSwine(1S,3S)-3-amino-4-difluoromethylenecyclopentanecarboxylic acid4-Aminobutyrate TransaminaseEnzyme InhibitorsProline

Identifiers

PMID26110556
PMCPMC4575653
OpenAlexW2442220105

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.