Evidence map›Paper›PMID 26109925›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society

Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study.

Jean-Charles Martin, Matthieu Maillot, Gérard Mazerolles, Alexandre Verdu, Bernard Lyan, Carole Migné, Catherine Defoort, Cecile Canlet, Christophe Junot, Claude Guillou and 28 more

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Multiplatform untargeted metabolomics.Magnetic resonance in chemistry : MRC · 2023
    Review
  9. Article
  10. Article
  11. Application of Metabolomics in Childhood Leukemia Diagnostics.Archivum immunologiae et therapiae experimentalis · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Analytical chemistry · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Jean-Charles MartinINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Matthieu MaillotINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Gérard MazerollesINRA, UMR 1083 SPO, INRA Campus SupAgro, Plateforme Polyphénols, 2 Place Viala, 34060 Montpellier Cedex 02, France.
Alexandre VerduBRUKER, 4 allée Hendrick Lorentz, 77447 Marne La Vallée Cedex 2, France.
Bernard LyanINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Carole MignéINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Catherine DefoortINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Cecile CanletINRA, UMR 1331 TOXALIM (Research Center in Food Toxicology), Axiom-Metatoul, 31027 Toulouse, France.
Christophe JunotLaboratoire d'Etude du Métabolisme des Médicaments, DSV/iBiTec-S/SPI, CEA-Saclay, 91191 Gif-sur-Yvette Cedex, France.
Claude GuillouEuropean Commission, Joint Research Centre, Institute for Health and Consumer Protection, Via Enrico Fermi 2749, 21027 Ispra, Italy.
Claudine ManachINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Daniel JabobINRA, UMR1332 Fruit Biology and Pathology, Centre INRA de Bordeaux, 33140 Villenave d'Ornon, France.
Delphine Jouan-Rimbaud BouveresseINRA, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France ; AgroParisTech, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France.
Estelle ParisINRA, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France ; AgroParisTech, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France.
Estelle Pujos-GuillotINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Fabien JourdanINRA, UMR 1331 TOXALIM (Research Center in Food Toxicology), Metabolism of Xenobiotics (MeX), 31027 Toulouse, France.
Franck GiacomoniINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Frédérique CourantLUNAM Université, Oniris, Laboratoire d'Etude des Résidus et Contaminants dans les Aliments (LABERCA), USC INRA 1329, BP 50707, 44307 Nantes Cedex 3, France.
Gaëlle FavéINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Gwenaëlle Le GallInstitute of Food Research, Norwich Research Park, Norwich, NR4 7UA UK.
Hubert ChassaigneEuropean Commission, Joint Research Centre, Institute for Health and Consumer Protection, Via Enrico Fermi 2749, 21027 Ispra, Italy.
Jean-Claude TabetUPMC, Institut Parisien de Chimie Moléculaire, UMR-CNRS 7201, 4 Place Jussieu, Paris Cédex 05, France.
Jean-Francois MartinINRA, UMR 1019, UNH, CRNH Auvergne, 63000 Clermond-Ferrand, France ; INRA, UMR 1019, Plateforme d'Exploration du Métabolisme, UNH, 63000 Clermond-Ferrand, France.
Jean-Philippe AntignacLUNAM Université, Oniris, Laboratoire d'Etude des Résidus et Contaminants dans les Aliments (LABERCA), USC INRA 1329, BP 50707, 44307 Nantes Cedex 3, France.
Laetitia ShintuAix-Marseille Université, ISM2, Campus Scientifique Saint Jérôme, 13397 Marseille Cedex 20, France.
Marianne DefernezInstitute of Food Research, Norwich Research Park, Norwich, NR4 7UA UK.
Mark PhiloInstitute of Food Research, Norwich Research Park, Norwich, NR4 7UA UK.
Marie-Cécile Alexandre-GouaubauAix-Marseille Université, ISM2, Campus Scientifique Saint Jérôme, 13397 Marseille Cedex 20, France.
Marie-Josephe Amiot-CarlinINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Mathilde BossisEuropean Commission, Joint Research Centre, Institute for Health and Consumer Protection, Via Enrico Fermi 2749, 21027 Ispra, Italy.
Mohamed N TribaUniversité Paris 13, Sorbonne Paris Cité, Laboratoire CSPBAT, CNRS (UMR 7244), 93017 Bobigny, France.
Natali StojilkovicLCH, Laboratoire des Courses Hippiques, 91370 Verrières-le-Buisson, France.
Nathalie BanzetAP-HM, Hôpital Timone, Laboratoire de Biochimie, 13385 Marseille, France.
Roland MoliniéUniversité de Picardie Jules Verne, EA 3900 BIOPI Biologie des plantes innovation, UFR de Pharmacie, 1 rue des Louvels, 80000 Amiens, France.
Romain BottINRA UMR1260, "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France ; Faculté de Médecine, Aix-Marseille Université, 13385 Marseille, France ; INSERM, UMR1062 "Nutrition, Obésité et Risque Thrombotique", 13385 Marseille, France.
Sophie GoulitquerMetaboMer, FR2424, CNRS/UPMC, Station Biologique de Roscoff, Place Georges Tessier, 29680 Roscoff, France.
Stefano CaldarelliAix-Marseille Université, ISM2, Campus Scientifique Saint Jérôme, 13397 Marseille Cedex 20, France.
Douglas N RutledgeINRA, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France ; AgroParisTech, UMR 1145 Ingénierie Procédés Aliments, 75005 Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metabo-ring initiative brought together five nuclear magnetic resonance instruments (NMR) and 11 different mass spectrometers with the objective of assessing the reliability of untargeted metabolomics approaches in obtaining comparable metabolomics profiles. This was estimated by measuring the proportion of common spectral information extracted from the different LCMS and NMR platforms. Biological samples obtained from 2 different conditions were analysed by the partners using their own in-house protocols. Test #1 examined urine samples from adult volunteers either spiked or not spiked with 32 metabolite standards. Test #2 involved a low biological contrast situation comparing the plasma of rats fed a diet either supplemented or not with vitamin D. The spectral information from each instrument was assembled into separate statistical blocks. Correlations between blocks (e.g., instruments) were examined (RV coefficients) along with the structure of the common spectral information (common components and specific weights analysis). In addition, in Test #1, an outlier individual was blindly introduced, and its identification by the various platforms was evaluated. Despite large differences in the number of spectral features produced after post-processing and the heterogeneity of the analytical conditions and the data treatment, the spectral information both within (NMR and LCMS) and across methods (NMR vs. LCMS) was highly convergent (from 64 to 91 % on average). No effect of the LCMS instrumentation (TOF, QTOF, LTQ-Orbitrap) was noted. The outlier individual was best detected and characterised by LCMS instruments. In conclusion, untargeted metabolomics analyses report consistent information within and across instruments of various technologies, even without prior standardisation.

Indexed as

Inter-laboratoryMass spectrometryMetabolic fingerprintingNuclear magnetic resonanceUntargeted metabolomics

Identifiers

PMID26109925
PMCPMC4475541

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.