Evidence map›Paper›PMID 26109333›Full record

ArticleCancer discovery2015

Cell-Free DNA Next-Generation Sequencing in Pancreatobiliary Carcinomas.

Oliver A Zill, Claire Greene, Dragan Sebisanovic, Lai Mun Siew, Jim Leng, Mary Vu, Andrew E Hendifar, Zhen Wang, Chloe E Atreya, Robin K Kelley and 7 more

Registry-linked trialAbstract read
In one paragraph

Article in Cancer discovery, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02797652 (Clinical Application of CTDNA in Operable Breast Cancer Patients), which is not on this map. Cited by 162 papers.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02797652 unknown statusnot on this mapstarted 2016, after this paper: background citation

Clinical Application of CTDNA in Operable Breast Cancer Patients

TypeobservationalSponsorPeking Union Medical College HospitalRan2016Enrolled60ConditionsBreast CancerArmsNeoadjuvant chemotherapy before surgery, Surgery followed by adjuvant chemotherapy
3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 277 citations in OpenAlex.

  1. Trial
  2. Trial
  3. A Multicenter, Open-Label Phase II Clinical Trial of Combined MEK plus EGFR Inhibition for Chemotherapy-Refractory Advanced Pancreatic Adenocarcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2016
    Trial
  4. Trial
  5. Observational
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Observational
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Oliver A ZillDepartment of Epidemiology and Biostatistics, University of California, San Francisco, California. Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Guardant Health, Inc., Redwood City, California.
Claire GreeneHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Dragan SebisanovicGuardant Health, Inc., Redwood City, California.
Lai Mun SiewGuardant Health, Inc., Redwood City, California.
Jim LengHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Mary VuMitchell Cancer Institute, University of South Alabama, Mobile, Alabama.
Andrew E HendifarCedars Sinai Medical Center, Los Angeles, California.
Zhen WangHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California.
Chloe E AtreyaHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Robin K KelleyHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Katherine Van LoonHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Andrew H KoHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Margaret A TemperoHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Trever G BivonaHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
Pamela N MunsterHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California.
AmirAli TalasazGuardant Health, Inc., Redwood City, California.
Eric A CollissonHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Medicine, University of California, San Francisco, California. Eric.Collisson@ucsf.edu.
Cedars-Sinai Medical Center · US

Funding

Discovery of Rational Companion Therapeutic Targets to Optimize Cancer TreatmentDP2CA174497 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BIVONA, TREVER G · 2012 to 2012
$2.3M
Targeting of Aberrant Signaling in Patient-Derived Colorectal Cancer ModelsK08CA175153 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ATREYA, CHLOE E. · 2013 to 2017
$867k
NCI NIH HHS DP2 CA174497NCI NIH HHS K08 CA175153
6 · The paper itself

Abstract

unlabelledPatients with pancreatic and biliary carcinomas lack personalized treatment options, in part because biopsies are often inadequate for molecular characterization. Cell-free DNA (cfDNA) sequencing may enable a precision oncology approach in this setting. We attempted to prospectively analyze 54 genes in tumor and cfDNA for 26 patients. Tumor sequencing failed in 9 patients (35%). In the remaining 17, 90.3% (95% confidence interval, 73.1%-97.5%) of mutations detected in tumor biopsies were also detected in cfDNA. The diagnostic accuracy of cfDNA sequencing was 97.7%, with 92.3% average sensitivity and 100% specificity across five informative genes. Changes in cfDNA correlated well with tumor marker dynamics in serial sampling (r = 0.93). We demonstrate that cfDNA sequencing is feasible, accurate, and sensitive in identifying tumor-derived mutations without prior knowledge of tumor genotype or the abundance of circulating tumor DNA. cfDNA sequencing should be considered in pancreatobiliary cancer trials where tissue sampling is unsafe, infeasible, or otherwise unsuccessful. SIGNIFICANCE: Precision medicine efforts in biliary and pancreatic cancers have been frustrated by difficulties in obtaining adequate tumor tissue for next-generation sequencing. cfDNA sequencing reliably and accurately detects tumor-derived mutations, paving the way for precision oncology approaches in these deadly diseases.

Indexed as

Biomarkers, TumorBile Duct NeoplasmsCarcinomaDisease ProgressionDNA, NeoplasmGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansMutationMutation RateNeoplasm StagingPancreatic NeoplasmsPrognosisReproducibility of ResultsSensitivity and SpecificityBiomarkers, TumorDNA, Neoplasm

Identifiers

PMID26109333
PMCPMC4592417
OpenAlexW2113754052

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.