Evidence map›Paper›PMID 26109064›Full record

ArticleThe Journal of biological chemistry2015

Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR.

Yanan He, Sneha Rangarajan, Melissa Kerzic, Ming Luo, Yihong Chen, Qian Wang, Yiyuan Yin, Creg J Workman, Kate M Vignali, Dario A A Vignali and 2 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. MHC Restriction: Where Are We Now?Viral immunology · 2020
    Article
  11. Structural understanding of T cell receptor triggering.Cellular & molecular immunology · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yanan HeFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, the Departments of Chemistry and Biochemistry and.
Sneha RangarajanFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742.
Melissa KerzicFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850.
Ming LuoFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, the Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China, and.
Yihong ChenFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850.
Qian WangFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850.
Yiyuan YinFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850.
Creg J Workmanthe Department of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261.
Kate M Vignalithe Department of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261.
Dario A A Vignalithe Department of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261.
Roy A MariuzzaFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, rmariuzz@umd.edu.
John OrbanFrom the W. M. Keck Laboratory for Structural Biology, University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, the Departments of Chemistry and Biochemistry and jorban@umd.edu.

Funding

Molecular Control of TCR Signaling and FunctionR01AI052199 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VIGNALI, DARIO AA · 2003 to 2015
$3.8M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR37AI036900 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A · 2000 to 2009
$3.2M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR01AI036900 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A · 1995 to 2014
$1.8M
Molecular Control of TCR Signaling and FunctionR56AI052199 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI VIGNALI, DARIO AA · 2010 to 2010
$435k
Structural Analysis of the TCR-CD3 Receptor ComplexR21AI101911 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A, ORBAN, JOHN · 2013 to 2014
$418k
Molecular Control of TCR Signaling and FunctionR21AI052199 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI VIGNALI, DARIO AA · 2002 to 2002
$375k
NIAID NIH HHS AI036900NIAID NIH HHS AI101911NIAID NIH HHS AI52199NIAID NIH HHS R01 AI036900NIAID NIH HHS R01 AI052199NIAID NIH HHS R21 AI052199NIAID NIH HHS R21 AI101911NIAID NIH HHS R37 AI036900NIAID NIH HHS R56 AI052199
6 · The paper itself

Abstract

The T cell receptor (TCR)-CD3 complex is composed of a genetically diverse αβ TCR heterodimer associated noncovalently with the invariant CD3 dimers CD3ϵγ, CD3ϵδ, and CD3ζζ. The TCR mediates peptide-MHC recognition, whereas the CD3 molecules transduce activation signals to the T cell. Although much is known about downstream T cell signaling pathways, the mechanism whereby TCR engagement by peptide-MHC initiates signaling is poorly understood. A key to solving this problem is defining the spatial organization of the TCR-CD3 complex and the interactions between its subunits. We have applied solution NMR methods to identify the docking site for CD3 on the β chain of a human autoimmune TCR. We demonstrate a low affinity but highly specific interaction between the extracellular domains of CD3 and the TCR constant β (Cβ) domain that requires both CD3ϵγ and CD3ϵδ subunits. The mainly hydrophilic docking site, comprising 9-11 solvent-accessible Cβ residues, is relatively small (∼400 Å(2)), consistent with the weak interaction between TCR and CD3 extracellular domains, and devoid of glycosylation sites. The docking site is centered on the αA and αB helices of Cβ, which are located at the base of the TCR. This positions CD3ϵγ and CD3ϵδ between the TCR and the T cell membrane, permitting us to distinguish among several possible models of TCR-CD3 association. We further correlate structural results from NMR with mutational data on TCR-CD3 interactions from cell-based assays.

Indexed as

Amino Acid SequenceCD3 ComplexEscherichia coliGene ExpressionHumansMagnetic Resonance SpectroscopyMolecular Docking SimulationMolecular Sequence DataMutationProtein FoldingProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryProtein SubunitsReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaCD3 ComplexProtein SubunitsReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaRecombinant Proteinscomplexnuclear magnetic resonance (NMR)signal transductionstructural biologyT-cell receptor (TCR)

Identifiers

PMID26109064
PMCPMC4528140

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.