Evidence map›Paper›PMID 26108691›Full record

ArticleLeukemia2015

Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia.

K Durinck, W Van Loocke, J Van der Meulen, I Van de Walle, M Ongenaert, P Rondou, A Wallaert, C E de Bock, N Van Roy, B Poppe and 5 more

Abstract read
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In one paragraph

Article in Leukemia, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  3. ETS1 Function in Leukemia and Lymphoma.Advances in experimental medicine and biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

K DurinckCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
W Van LoockeCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
J Van der MeulenCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
I Van de WalleDepartment of Clinical Chemistry, Microbiology and Immunology, Ghent University, Ghent, Belgium.
M OngenaertCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
P RondouCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
A WallaertCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
C E de BockLaboratory for the Molecular Biology of Leukemia, Center for Human Genetics, KU Leuven and Center for the Biology of Disease, VIB, Leuven, Belgium.
N Van RoyCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
B PoppeCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
J CoolsLaboratory for the Molecular Biology of Leukemia, Center for Human Genetics, KU Leuven and Center for the Biology of Disease, VIB, Leuven, Belgium.
J SoulierGenome Rearrangements and Cancer Laboratory, U944 INSERM, University Paris Diderot and Hematology Laboratory, Saint-Louis Hospital, Paris, France.
T TaghonDepartment of Clinical Chemistry, Microbiology and Immunology, Ghent University, Ghent, Belgium.
F SpelemanCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
P Van VlierbergheCenter for Medical Genetics, Department of Pediatrics and Genetics, Ghent University, Ghent, Belgium.
Ghent University Hospital · BEKU Leuven · BEGhent University · BEUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TLX1 transcription factor is critically involved in the multi-step pathogenesis of T-cell acute lymphoblastic leukemia (T-ALL) and often cooperates with NOTCH1 activation during malignant T-cell transformation. However, the exact molecular mechanism by which these T-cell specific oncogenes cooperate during transformation remains to be established. Here, we used chromatin immunoprecipitation followed by sequencing to establish the genome-wide binding pattern of TLX1 in human T-ALL. This integrative genomics approach showed that ectopic TLX1 expression drives repression of T cell-specific enhancers and mediates an unexpected transcriptional antagonism with NOTCH1 at critical target genes, including IL7R and NOTCH3. These phenomena coordinately trigger a TLX1-driven pre-leukemic phenotype in human thymic precursor cells, reminiscent of the thymus regression observed in murine TLX1 tumor models, and create a strong genetic pressure for acquiring activating NOTCH1 mutations as a prerequisite for full leukemic transformation. In conclusion, our results uncover a functional antagonism between cooperative oncogenes during the earliest phases of tumor development and provide novel insights in the multi-step pathogenesis of TLX1-driven human leukemia.

Indexed as

Cell Line, TumorChromatin ImmunoprecipitationHomeodomain ProteinsHumansOncogenesPrecursor T-Cell Lymphoblastic Leukemia-LymphomaProto-Oncogene ProteinsReceptor, Notch1Homeodomain ProteinsNOTCH1 protein, humanProto-Oncogene ProteinsReceptor, Notch1TLX1 protein, human

Identifiers

PMID26108691
OpenAlexW1493960210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.