Evidence map›Paper›PMID 26107960›Full record

ArticlePLoS genetics2015

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding.

Xin Xie, Michael J T Stubbington, Jesper K Nissen, Kristian G Andersen, Daniel Hebenstreit, Sarah A Teichmann, Alexander G Betz

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. FOXP3 exon 2 controls TScience immunology · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Histone deacetylase function in CD4Nature reviews. Immunology · 2018
    Review
  16. Article
  17. Article
  18. FoxP3 scanning mutagenesis reveals functional variegation and mild mutations with atypical autoimmune phenotypes.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. The regulation of immune tolerance by FOXP3.Nature reviews. Immunology · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xin XieMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
Michael J T StubbingtonEuropean Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom.
Jesper K NissenMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
Kristian G AndersenMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
Daniel HebenstreitMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
Sarah A TeichmannEuropean Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom.
Alexander G BetzMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
MRC Laboratory of Molecular Biology · GBEuropean Bioinformatics Institute · GB

Funding

Medical Research Council MC_U105184296
6 · The paper itself

Abstract

The lineage factor Foxp3 is essential for the development and maintenance of regulatory T cells, but little is known about the mechanisms involved. Here, we demonstrate that an N-terminal proline-rich interaction region is crucial for Foxp3's function. Subdomains within this key region link Foxp3 to several independent mechanisms of transcriptional regulation. Our study suggests that Foxp3, even in the absence of its DNA-binding forkhead domain, acts as a bridge between DNA-binding interaction partners and proteins with effector function permitting it to regulate a large number of genes. We show that, in one such mechanism, Foxp3 recruits class I histone deacetylases to the promoters of target genes, counteracting activation-induced histone acetylation and thereby suppressing their expression.

Indexed as

Gene Expression RegulationAnimalsCell LineageCell NucleusDNAFemaleForkhead Transcription FactorsGene Knockdown TechniquesHEK293 CellsHistone DeacetylasesHistonesHumansInterleukin-2Mice, Inbred BALB CPromoter Regions, GeneticProtein Structure, TertiaryDNAForkhead Transcription FactorsFoxp3 protein, mouseHistone DeacetylasesHistonesInterleukin-2

Identifiers

PMID26107960
PMCPMC4480970
OpenAlexW2153390615

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.