Evidence map›Paper›PMID 26107645›Full record

ArticlePloS one2015

Effect of CYP2B6 Gene Polymorphisms on Efavirenz Plasma Concentrations in Chinese Patients with HIV Infection.

Xianmin Meng, Kang Yin, Jiangrong Wang, Ping Dong, Li Liu, Yinzhong Shen, Li Shen, Qing Ma, Hongzhou Lu, Weimin Cai

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Sources of Interindividual Variability.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  5. Influence ofPharmacogenomics and personalized medicine · 2021
    Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Xianmin MengDepartment of Clinical Pharmacy and Pharmaceutical Administration, School of Pharmacy, Fudan University, Shanghai, China; Department of Pharmacy, Shanghai Public Health Clinical Center, Shanghai, China.
Kang YinDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Jiangrong WangDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Ping DongDepartment of Pharmacy, Shanghai Public Health Clinical Center, Shanghai, China.
Li LiuDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Yinzhong ShenDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Li ShenDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Qing MaDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China; Department of Pharmacy Practice, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United States of America.
Hongzhou LuDepartment of Infectious Disease, Shanghai Public Health Clinical Center, Shanghai, China.
Weimin CaiDepartment of Clinical Pharmacy and Pharmaceutical Administration, School of Pharmacy, Fudan University, Shanghai, China.
Shanghai Public Health Clinical Center · CNFudan University · CN

Funding

Antiretroviral pharmacogenomics, pharmacokinetics and toxicity in neuroAIDSK08MH098794 · NIMH · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MA, QING · 2012 to 2016
$599k
NIMH NIH HHS K08 MH098794NIMH NIH HHS K08MH098794
6 · The paper itself

Abstract

objectivesThe main aim of this study was to investigate the effect of CYP2B6 gene polymorphisms on efavirenz (EFV) plasma concentrations in Han Chinese patients with human immunodeficiency virus (HIV) infection.

methodsIn total, 322 patients were recruited for study. EFV plasma concentrations at steady-state were determined using high-performance liquid chromatography. Genotyping for seven single nucleotide polymorphisms (SNPs), including 171+967C>A, 171+3212C>T, 171+4335T>C, 516G>T, 785A>G, 1295-913G>A, and *1355A>G of CYP2B6, was performed using ligase detection reaction (LDR). SPSS 18.0 and Haploview 4.2 were applied for statistical analyses.

resultsThe average EFV concentration of patients was 2.35±2.09 μg/mL. Overall, 22% patients displayed EFV concentrations out of the therapeutic range of 1-4 μg/mL (13.1% < 1 μg/mL, 9.3% > 4 μg/mL). We observed significant association of 171+967C>A, 171+4335T>C, 516G>T, 785A>G and *1355A>G with high plasma EFV levels (p<.01). The predictive accuracy values of 171+4335CC, 516TT and 785GG for EFV concentrations > 4 μg/mL were 56.7%, 56.7% and 60%, respectively. We observed strong linkage disequilibrium for 171+967C>A, 171+4335T>C, 516G>T and 785A>G, resulting in five haplotypes. The frequencies of the five haplotypes (high to low) were as follows: CCTG (0.328), ACTG (0.280), ACCT (0.189), ATTG (0.186) and ACCG (0.017). The frequency of CCTG (0.524) in patients with EFV plasma concentrations < 1 μg/mL was significantly higher than that in other patient groups, while that of ACCT (0.733) was significantly higher in patients with EFV concentrations > 4 μg/mL, relative to other patient groups. Average EFV concentrations of patients carrying ACTG (1.78 μg/mL), ACCT (7.50 μg/mL), and ATTG (1.92 μg/mL) haplotypes were markedly higher than those of patients carrying the CCTG haplotype. The predictive accuracy of ACCT for EFV > 4 μg/mL was 81%.

conclusionsChinese patients administered standard doses of EFV require therapeutic drug monitoring or personalized medication management. Based on the current findings, we propose that 171+4335T>C, 516G>T, 785A>G and haplotype ACCT may be effectively used as genomic markers for EFV, which should aid in improving the efficacy of EFV-containing treatments and reduce the incidence of adverse reactions.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAgedAlkynesAllelesAnti-HIV AgentsAsian PeopleBenzoxazinesChinaCyclopropanesCytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 InducersDrug MonitoringDrug Therapy, CombinationFemaleAlkynesAnti-HIV AgentsBenzoxazinesCyclopropanesCYP2B6 protein, humanCytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 InducersefavirenzReverse Transcriptase Inhibitors

Identifiers

PMID26107645
PMCPMC4479596
OpenAlexW2282319100

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.