Evidence map›Paper›PMID 26107257›Full record

ArticlePloS one2015

Polymorphisms in CaSR and CLDN14 Genes Associated with Increased Risk of Kidney Stone Disease in Patients from the Eastern Part of India.

Manalee Guha, Biswabandhu Bankura, Sudakshina Ghosh, Arup Kumar Pattanayak, Saurabh Ghosh, Dilip Kumar Pal, Anurag Puri, Anup Kumar Kundu, Madhusudan Das

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 5 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 5 syntheses or guidelines pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
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  13. The role of claudins in homeostasis.Nature reviews. Nephrology · 2023
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  17. Review
  18. Association study ofOpen life sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Manalee GuhaDepartment of Zoology, University of Calcutta, Kolkata, West Bengal, India.
Biswabandhu BankuraDepartment of Zoology, University of Calcutta, Kolkata, West Bengal, India.
Sudakshina GhoshDepartment of Zoology, University of Calcutta, Kolkata, West Bengal, India.
Arup Kumar PattanayakDepartment of Zoology, University of Calcutta, Kolkata, West Bengal, India.
Saurabh GhoshHuman Genetics Unit, Indian Statistical Institute, Kolkata, West Bengal, India.
Dilip Kumar PalDepartment of Urology, Institute of Post Graduate Medical Education & Research, Kolkata, West Bengal, India.
Anurag PuriDepartment of Urology, Institute of Post Graduate Medical Education & Research, Kolkata, West Bengal, India.
Anup Kumar KunduDepartment of Urology, Institute of Post Graduate Medical Education & Research, Kolkata, West Bengal, India.
Madhusudan DasDepartment of Zoology, University of Calcutta, Kolkata, West Bengal, India.
University of Calcutta · INInstitute of Post Graduate Medical Education and Research · INIndian Statistical Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kidney stone disease (KSD) is a major clinical problem imposing a large burden for both healthcare and economy globally. In India, the prevalence of kidney stone disease is rapidly increasing. This study aimed to evaluate the association between genetic defects in vitamin D receptor (VDR), calcium sensing receptor (CaSR) and claudin 14 (CLDN14) genes and kidney stone disease in patients from eastern India. We enrolled 200 consecutive kidney stone patients (age 18-60 years) (cases) and their corresponding sex and age matched 200 normal individuals (controls). To identify genetic variants responsible for KSD, we performed sequence analysis of VDR, CaSR and CLDN14 genes. Four non-synonymous (rs1801725, rs1042636, rs1801726 and rs2228570), one synonymous (rs219780) and three intronic single nucleotide polymorphisms (SNPs) (rs731236, rs219777 and rs219778) were identified. Genotype and allele frequency analysis of these SNPs revealed that, rs1801725 (Ala986Ser), rs1042636 (Arg990Gly) of CaSR gene and rs219778, rs219780 (Thr229Thr) of CLDN14 gene were significantly associated with KSD. Serum calcium levels were significantly higher in subjects carrying 986Ser allele and calcium excretion was higher in subjects bearing 990Gly allele. In conclusion, rs1801725, rs1042636, rs219778 and rs219780 SNPs were associated with kidney stone risk in patients from the eastern part of India.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdolescentAdultAllelesCalciumCase-Control StudiesClaudinsFemaleGene ExpressionGene FrequencyHumansIndiaKidney CalculiMaleMiddle AgedCalciumCASR protein, humanclaudin 14ClaudinsReceptors, CalcitriolReceptors, Calcium-SensingVDR protein, human

Identifiers

PMID26107257
PMCPMC4480968
OpenAlexW808077827

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.