Evidence map›Paper›PMID 26106611›Full record

ArticleBioMed research international2015

Transcriptomic and Immunohistochemical Profiling of SLC6A14 in Pancreatic Ductal Adenocarcinoma.

Alan R Penheiter, Sibel Erdogan, Stephen J Murphy, Steven N Hart, Joema Felipe Lima, Fariborz Rakhshan Rohakhtar, Daniel R O'Brien, William R Bamlet, Ryan E Wuertz, Thomas C Smyrk and 4 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  12. An Integrated Microarray Analysis Reveals Significant Diagnostic and Prognostic Biomarkers in Pancreatic Cancer.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  13. Amino Acid Transporter SLC6A14 (ATBFrontiers in cell and developmental biology · 2020
    Review
  14. Article
  15. Trafficking of the amino acid transporter BBiochimica et biophysica acta. Molecular cell research · 2019
    Article
  16. Identification of a pyruvate-to-lactate signature in pancreatic intraductal papillary mucinous neoplasms.Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] · 2018
    Article
  17. The NaThe AAPS journal · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Alan R PenheiterDepartment of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Sibel ErdoganDepartment of Biochemistry and Molecular Biology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Stephen J MurphyDepartment of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Steven N HartBiomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Joema Felipe LimaDepartment of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Fariborz Rakhshan RohakhtarMedical Genome Facility, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Daniel R O'BrienBiomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
William R BamletBiomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Ryan E WuertzDepartment of Epidemiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Thomas C SmyrkDepartment of Anatomic Pathology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Fergus J CouchDepartment of Laboratory Medicine and Pathology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
George VasmatzisDepartment of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Claire E BenderDepartment of Radiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Stephanie K CarlsonDepartment of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA ; Department of Radiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
Mayo Clinic · US

Funding

Tissue CoreP50CA102701 · NCI · MAYO CLINIC ROCHESTER · PI MUKHOPADHYAY, DEBABRATA · 2004 to 2018
$32.7M
NCI NIH HHS P50 CA102701NCI NIH HHS P50CA102701
6 · The paper itself

Abstract

We used a target-centric strategy to identify transporter proteins upregulated in pancreatic ductal adenocarcinoma (PDAC) as potential targets for a functional imaging probe to complement existing anatomical imaging approaches. We performed transcriptomic profiling (microarray and RNASeq) on histologically confirmed primary PDAC tumors and normal pancreas tissue from 33 patients, including five patients whose tumors were not visible on computed tomography. Target expression was confirmed with immunohistochemistry on tissue microarrays from 94 PDAC patients. The best imaging target identified was SLC6A14 (a neutral and basic amino acid transporter). SLC6A14 was overexpressed at the transcriptional level in all patients and expressed at the protein level in 95% of PDAC tumors. Very little is known about the role of SLC6A14 in PDAC and our results demonstrate that this target merits further investigation as a candidate transporter for functional imaging of PDAC.

Indexed as

AdenocarcinomaAgedAmino Acid Transport SystemsAmino Acid Transport Systems, NeutralBiomarkers, TumorCarcinoma, Pancreatic DuctalFemaleGene Expression Regulation, NeoplasticHumansMaleMiddle AgedAmino Acid Transport SystemsAmino Acid Transport Systems, NeutralBiomarkers, TumorSLC6A14 protein, human

Identifiers

PMID26106611
PMCPMC4461733
OpenAlexW1558737388

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.