Evidence map›Paper›PMID 26106520›Full record

ArticleFEBS open bio2015

Identification of distinctive interdomain interactions among ZP-N, ZP-C and other domains of zona pellucida glycoproteins underlying association of chicken egg-coat matrix.

Hiroki Okumura, Takahiro Sato, Rio Sakuma, Hideaki Fukushima, Tsukasa Matsuda, Minoru Ujita

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Zinc sparks induce physiochemical changes in the egg zona pellucida that prevent polyspermy.Integrative biology : quantitative biosciences from nano to macro · 2017
    Article
  9. A structured interdomain linker directs self-polymerization of human uromodulin.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hiroki OkumuraDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Meijo University, Nagoya 468-8502, Japan.
Takahiro SatoDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Meijo University, Nagoya 468-8502, Japan.
Rio SakumaDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Meijo University, Nagoya 468-8502, Japan.
Hideaki FukushimaDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Meijo University, Nagoya 468-8502, Japan.
Tsukasa MatsudaDepartment of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Minoru UjitaDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Meijo University, Nagoya 468-8502, Japan.
Meijo University · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The vertebrate egg coat, including mammalian zona pellucida, is an oocyte-specific extracellular matrix comprising two to six zona pellucida (ZP) glycoproteins. The egg coat plays important roles in fertilization, especially in species-specific interactions with sperm to induce the sperm acrosome reaction and to form the block to polyspermy. It is suggested that the physiological functions of the egg coat are mediated and/or regulated coordinately by peptide and carbohydrate moieties of the ZP glycoproteins that are spatially arranged in the egg coat, whereas a comprehensive understanding of the architecture of vertebrate egg-coat matrix remains elusive. Here, we deduced the orientations and/or distributions of chicken ZP glycoproteins, ZP1, ZP3 and ZPD, in the egg-coat matrix by confocal immunofluorescent microscopy, and in the ZP1-ZP3 complexes generated in vitro by co-immunoprecipitation assays. We further confirmed interdomain interactions of the ZP glycoproteins by far-Western blot analyses of the egg-coat proteins and pull-down assays of ZP1 in the serum, using recombinant domains of ZP glycoproteins as probes. Our results suggest that the ZP1 and ZP3 bind through their ZP-C domains to form the ZP1-ZP3 complexes and fibrils, which are assembled into bundles through interactions between the repeat domains of ZP1 to form the ZP1-ZP3 matrix, and that the ZPD molecules self-associate and bind to the ZP1-ZP3 matrix through its ZP-N and ZP-C domains to form the egg-coat matrix. Based on these results, we propose a tentative model for the architecture of the chicken egg-coat matrix that might be applicable to other vertebrate ones.

Indexed as

CBB, Coomassie Brilliant BlueDIC, differential interference contrastDTT, dithiothreitolEGF, epidermal growth factorEgg coatEHP, external hydrophobic patchExtracellular matrixFertilizationHis6, hexahistidineIHP, internal hydrophobic patchInterdomain interactionMBP, maltose binding proteinRT, room temperatureTGFR, transforming growth factor-β receptorTHP, Tamm–Horsfall proteinTrx, thioredoxinZona pellucidaZP, zona pellucida

Identifiers

PMID26106520
PMCPMC4475693
OpenAlexW431875751

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.