Evidence map›Paper›PMID 26106369›Full record

ArticleFrontiers in microbiology2015

S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence.

Alexandra K Perras, Bertram Daum, Christine Ziegler, Lynelle K Takahashi, Musahid Ahmed, Gerhard Wanner, Andreas Klingl, Gerd Leitinger, Dagmar Kolb-Lenz, Simonetta Gribaldo and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Review
  12. Archaeal cell surface biogenesis.FEMS microbiology reviews · 2018
    Article
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  15. Review
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  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Alexandra K PerrasDepartment of Internal Medicine, Medical University of Graz Graz, Austria ; Department of Microbiology and Archaea Center, University of Regensburg Regensburg, Germany.
Bertram DaumDepartment of Structural Biology, Max Planck Institute of Biophysics Frankfurt, Germany.
Christine ZieglerDepartment of Biophysics, University of Regensburg Regensburg, Germany.
Lynelle K TakahashiChemical Sciences Division, Lawrence Berkeley National Laboratory Berkeley, CA, USA.
Musahid AhmedChemical Sciences Division, Lawrence Berkeley National Laboratory Berkeley, CA, USA.
Gerhard WannerFaculty of Biology, Ludwig-Maximilians-University of Munich Munich, Germany.
Andreas KlinglFaculty of Biology, Ludwig-Maximilians-University of Munich Munich, Germany.
Gerd LeitingerResearch Unit Electron Microscopic Techniques, Institute of Cell Biology, Histology and Embryology, Medical University of Graz Graz, Austria.
Dagmar Kolb-LenzInstitute of Cell Biology, Histology and Embryology, Medical University of Graz Graz, Austria ; Core Facility Ultrastructure, Analysis, Center for Medical Research Institute, Medical University of Graz Graz, Austria.
Simonetta GribaldoUnité Biologie Moléculaire du Gene chez les Extrêmophiles, Departément de Microbiologie, Institut Pasteur Paris, France.
Anna AuerbachDepartment of Microbiology and Archaea Center, University of Regensburg Regensburg, Germany.
Maximilian MoraDepartment of Internal Medicine, Medical University of Graz Graz, Austria.
Alexander J ProbstDepartment of Earth and Planetary Science, University of California, Berkeley Berkeley, CA, USA.
Annett BellackDepartment of Microbiology and Archaea Center, University of Regensburg Regensburg, Germany.
Christine Moissl-EichingerDepartment of Internal Medicine, Medical University of Graz Graz, Austria ; Department of Microbiology and Archaea Center, University of Regensburg Regensburg, Germany ; BioTechMed-Graz Graz, Austria.
Medical University of Graz · ATUniversity of Regensburg · DELawrence Berkeley National Laboratory · USLudwig-Maximilians-Universität München · DEBiology of Extremophiles Laboratory · FRMax Planck Institute of Biophysics · DEUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The uncultivated "Candidatus Altiarchaeum hamiconexum" (formerly known as SM1 Euryarchaeon) carries highly specialized nano-grappling hooks ("hami") on its cell surface. Until now little is known about the major protein forming these structured fibrous cell surface appendages, the genes involved or membrane anchoring of these filaments. These aspects were analyzed in depth in this study using environmental transcriptomics combined with imaging methods. Since a laboratory culture of this archaeon is not yet available, natural biofilm samples with high Ca. A. hamiconexum abundance were used for the entire analyses. The filamentous surface appendages spanned both membranes of the cell, which are composed of glycosyl-archaeol. The hami consisted of multiple copies of the same protein, the corresponding gene of which was identified via metagenome-mapped transcriptome analysis. The hamus subunit proteins, which are likely to self-assemble due to their predicted beta sheet topology, revealed no similiarity to known microbial flagella-, archaella-, fimbriae- or pili-proteins, but a high similarity to known S-layer proteins of the archaeal domain at their N-terminal region (44-47% identity). Our results provide new insights into the structure of the unique hami and their major protein and indicate their divergent evolution with S-layer proteins.

Indexed as

archaeaarchaeal cell surface appendagesdouble-membraneelectron cryo-tomographyenvironmental transcriptomicshaminano-grappling hooksS-layers

Identifiers

PMID26106369
PMCPMC4460559
OpenAlexW1553386777

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.