Evidence map›Paper›PMID 26106155›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Trp triad-dependent rapid photoreduction is not required for the function of Arabidopsis CRY1.

Jie Gao, Xu Wang, Meng Zhang, Mingdi Bian, Weixian Deng, Zecheng Zuo, Zhenming Yang, Dongping Zhong, Chentao Lin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Plant direct · 2022
    Article
  6. Article
  7. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
  8. Review
  9. Cryptochromes: Photochemical and structural insight into magnetoreception.Protein science : a publication of the Protein Society · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. ThePhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  15. The oligomeric structures of plant cryptochromes.Nature structural & molecular biology · 2020
    Article
  16. Article
  17. A structural view of plant CRY2 photoactivation and inactivation.Nature structural & molecular biology · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jie GaoLaboratory of Soil and Plant Molecular Genetics, College of Plant Science, Jilin University, Changchun 130062, China; Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095;
Xu WangDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095; Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China;
Meng ZhangDepartment of Physics, Ohio State University, Columbus, OH 43210; Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210.
Mingdi BianLaboratory of Soil and Plant Molecular Genetics, College of Plant Science, Jilin University, Changchun 130062, China;
Weixian DengLaboratory of Soil and Plant Molecular Genetics, College of Plant Science, Jilin University, Changchun 130062, China;
Zecheng ZuoLaboratory of Soil and Plant Molecular Genetics, College of Plant Science, Jilin University, Changchun 130062, China;
Zhenming YangLaboratory of Soil and Plant Molecular Genetics, College of Plant Science, Jilin University, Changchun 130062, China; zmyang@jlu.edu.cn zhong.28@osu.edu clin@mcdb.ucla.edu.
Dongping ZhongDepartment of Physics, Ohio State University, Columbus, OH 43210; Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210 zmyang@jlu.edu.cn zhong.28@osu.edu clin@mcdb.ucla.edu.
Chentao LinDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095; zmyang@jlu.edu.cn zhong.28@osu.edu clin@mcdb.ucla.edu.
Jilin University · CNThe Ohio State University · USFujian Agriculture and Forestry University · CNUniversity of California, Los Angeles · US

Funding

The signaling mechanisms of Arabidopsis CRY2R01GM056265 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LIN, CHENTAO · 2001 to 2021
$9.5M
Functional Dynamics and Molecular Mechanism of PhotolayseR01GM074813 · NIGMS · OHIO STATE UNIVERSITY · PI ZHONG, DONGPING · 2007 to 2016
$2.6M
PLANT PHOTOSENSORY RECEPTOR CRY2--SIGNALING MECHANISMR29GM056265 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LIN, CHENTAO · 1997 to 2001
$204k
NIGMS NIH HHS GM074813NIGMS NIH HHS GM56265NIGMS NIH HHS R01 GM056265NIGMS NIH HHS R01 GM074813NIGMS NIH HHS R29 GM056265
6 · The paper itself

Abstract

Cryptochromes in different evolutionary lineages act as either photoreceptors or light-independent transcription repressors. The flavin cofactor of both types of cryptochromes can be photoreduced in vitro by electron transportation via three evolutionarily conserved tryptophan residues known as the "Trp triad." It was hypothesized that Trp triad-dependent photoreduction leads directly to photoexcitation of cryptochrome photoreceptors. We tested this hypothesis by analyzing mutations of Arabidopsis cryptochrome 1 (CRY1) altered in each of the three Trp-triad tryptophan residues (W324, W377, and W400). Surprisingly, in contrast to a previous report all photoreduction-deficient Trp-triad mutations of CRY1 remained physiologically and biochemically active in Arabidopsis plants. ATP did not enhance rapid photoreduction of the wild-type CRY1, nor did it rescue the defective photoreduction of the CRY1(W324A) and CRY1(W400F) mutants that are photophysiologically active in vivo. The lack of correlation between rapid flavin photoreduction or the effect of ATP on the rapid flavin photoreduction and the in vivo photophysiological activities of plant cryptochromes argues that the Trp triad-dependent photoreduction is not required for the function of cryptochromes and that further efforts are needed to elucidate the photoexcitation mechanism of cryptochrome photoreceptors.

Indexed as

LightAdenosine TriphosphateAmino Acid SequenceArabidopsisArabidopsis ProteinsCryptochromesHypocotylMolecular Sequence DataMutationOxidation-ReductionPhotochemical ProcessesStructure-Activity RelationshipTryptophanAdenosine TriphosphateArabidopsis ProteinsCRY1 protein, ArabidopsisCryptochromesTryptophanArabidopsisblue lightcryptochromephotoreductionTrp-triad

Identifiers

PMID26106155
PMCPMC4517207
OpenAlexW1929941994

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.