Evidence map›Paper›PMID 26104714›Full record

ReviewMicrobiology spectrum2015

P Transposable Elements in Drosophila and other Eukaryotic Organisms.

Sharmistha Majumdar, Donald C Rio

Open access · greenAbstract readReview
In one paragraph

Review in Microbiology spectrum, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Experimentally evolvingGenome research · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Gene drives gaining speed.Nature reviews. Genetics · 2022
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. JUM is a computational method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Sharmistha MajumdarDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204.
Donald C RioDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204.
Indian Institute of Technology Gandhinagar · INUniversity of California, Berkeley · US

Funding

DNA transposons and alternative pre-mRNA splicing.R35GM118121 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2016 to 2025
$6.7M
BIOCHEMISTRY OF REGULATED PRE-MRNA SPLICING/DROSOPHILAR01GM061987 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2000 to 2010
$3.0M
Alternative pre-mRNA Splicing in DrosophilaR01GM097352 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2012 to 2015
$1.6M
Human THAP9-an active DNA transposaseR01GM104385 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2013 to 2016
$1.4M
MECHANISMS &REGULATION OF DROSOPHILA P ELMNT TRANSPSTNR01GM048862 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 1992 to 2003
$1.4M
NIGMS NIH HHS R01 GM048862NIGMS NIH HHS R01 GM061987NIGMS NIH HHS R01 GM097352NIGMS NIH HHS R01 GM104385NIGMS NIH HHS R35 GM118121
6 · The paper itself

Abstract

P transposable elements were discovered in Drosophila as the causative agents of a syndrome of genetic traits called hybrid dysgenesis. Hybrid dysgenesis exhibits a unique pattern of maternal inheritance linked to the germline-specific small RNA piwi-interacting (piRNA) pathway. The use of P transposable elements as vectors for gene transfer and as genetic tools revolutionized the field of Drosophila molecular genetics. P element transposons have served as a useful model to investigate mechanisms of cut-and-paste transposition in eukaryotes. Biochemical studies have revealed new and unexpected insights into how eukaryotic DNA-based transposons are mobilized. For example, the P element transposase makes unusual 17nt-3' extended double-strand DNA breaks at the transposon termini and uses guanosine triphosphate (GTP) as a cofactor to promote synapsis of the two transposon ends early in the transposition pathway. The N-terminal DNA binding domain of the P element transposase, called a THAP domain, contains a C2CH zinc-coordinating motif and is the founding member of a large family of animal-specific site-specific DNA binding proteins. Over the past decade genome sequencing efforts have revealed the presence of P element-like transposable elements or P element transposase-like genes (called THAP9) in many eukaryotic genomes, including vertebrates, such as primates including humans, zebrafish and Xenopus, as well as the human parasite Trichomonas vaginalis, the sea squirt Ciona, sea urchin and hydra. Surprisingly, the human and zebrafish P element transposase-related THAP9 genes promote transposition of the Drosophila P element transposon DNA in human and Drosophila cells, indicating that the THAP9 genes encode active P element "transposase" proteins.

Indexed as

DNA Transposable ElementsAnimalsDNA Breaks, Double-StrandedEukaryotaGuanosine TriphosphateHumansRecombination, GeneticTransposasesDNA Transposable ElementsGuanosine TriphosphateTransposases

Identifiers

PMID26104714
PMCPMC4399808
OpenAlexW928680581

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.