Evidence map›Paper›PMID 26103963›Full record

ArticleOrphanet journal of rare diseases2015

Next-generation sequencing applied to a large French cone and cone-rod dystrophy cohort: mutation spectrum and new genotype-phenotype correlation.

Elise Boulanger-Scemama, Said El Shamieh, Vanessa Démontant, Christel Condroyer, Aline Antonio, Christelle Michiels, Fiona Boyard, Jean-Paul Saraiva, Mélanie Letexier, Eric Souied and 4 more

Open access · goldAbstract read
In one paragraph

Article in Orphanet journal of rare diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 114 citations in OpenAlex.

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  11. Heliyon · 2024
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  16. Clinical and Molecular Aspects of C2orf71/PCARE in Retinal Diseases.International journal of molecular sciences · 2023
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Elise Boulanger-ScemamaINSERM, U968, Paris, F-75012, France.
Said El ShamiehINSERM, U968, Paris, F-75012, France.
Vanessa DémontantINSERM, U968, Paris, F-75012, France.
Christel CondroyerINSERM, U968, Paris, F-75012, France.
Aline AntonioINSERM, U968, Paris, F-75012, France.
Christelle MichielsINSERM, U968, Paris, F-75012, France.
Fiona BoyardINSERM, U968, Paris, F-75012, France.
Jean-Paul SaraivaIntegraGen SA, Genopole CAMPUS 1 bat G8 FR-91030 EVRY, Paris, France.
Mélanie LetexierIntegraGen SA, Genopole CAMPUS 1 bat G8 FR-91030 EVRY, Paris, France.
Eric SouiedCentre Hospitalier Intercommunal de Créteil, Department of Ophthalmology, Université Paris-Est Créteil, 94000, Créteil, France.
Saddek Mohand-SaïdINSERM, U968, Paris, F-75012, France.
José-Alain SahelINSERM, U968, Paris, F-75012, France.
Christina ZeitzINSERM, U968, Paris, F-75012, France. christina.zeitz@inserm.fr.
Isabelle AudoINSERM, U968, Paris, F-75012, France. isabelle.audo@inserm.fr.
Institut de la Vision · FRInserm · FRCentre hospitalier national d'ophtalmologie des Quinze-Vingts · FRSorbonne Université · FRGenopole (France) · FRHôpital Intercommunal de Créteil · FRIntegraGen (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCone and cone-rod dystrophies are clinically and genetically heterogeneous inherited retinal disorders with predominant cone impairment. They should be distinguished from the more common group of rod-cone dystrophies (retinitis pigmentosa) due to their more severe visual prognosis with early central vision loss. The purpose of our study was to document mutation spectrum of a large French cohort of cone and cone-rod dystrophies.

methodsWe applied Next-Generation Sequencing targeting a panel of 123 genes implicated in retinal diseases to 96 patients. A systematic filtering approach was used to identify likely disease causing variants, subsequently confirmed by Sanger sequencing and co-segregation analysis when possible.

resultsOverall, the likely causative mutations were detected in 62.1 % of cases, revealing 33 known and 35 novel mutations. This rate was higher for autosomal dominant (100 %) than autosomal recessive cases (53.8 %). Mutations in ABCA4 and GUCY2D were responsible for 19.2 % and 29.4 % of resolved cases with recessive and dominant inheritance, respectively. Furthermore, unexpected genotype-phenotype correlations were identified, confirming the complexity of inherited retinal disorders with phenotypic overlap between cone-rod dystrophies and other retinal diseases.

conclusionsIn summary, this time-efficient approach allowed mutation detection in the most important cohort of cone-rod dystrophies investigated so far covering the largest number of genes. Association of known gene defects with novel phenotypes and mode of inheritance were established.

Indexed as

GenotypeMutationPhenotypeCohort StudiesDNA Copy Number VariationsFemaleFranceHigh-Throughput Nucleotide SequencingHumansMalePedigreeRetinitis Pigmentosa

Identifiers

PMID26103963
PMCPMC4566196
OpenAlexW1526371295

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.