Evidence map›Paper›PMID 26100869›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Structural and functional insights into Escherichia coli α2-macroglobulin endopeptidase snap-trap inhibition.

Irene Garcia-Ferrer, Pedro Arêde, Josué Gómez-Blanco, Daniel Luque, Stephane Duquerroy, José R Castón, Theodoros Goulas, F Xavier Gomis-Rüth

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Isolation and Endopeptidase Inhibition of Human α 2-Macroglobulin.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Cryo-EM structures show the mechanistic basis of pan-peptidase inhibition by human αProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. A Unique Gene Module inFrontiers in microbiology · 2021
    Article
  12. αThe Journal of biological chemistry · 2020
    Article
  13. Article
  14. Recombinant production of human αScientific reports · 2019
    Article
  15. Comparative Genome Analysis and Evaluation of Probiotic Characteristics ofKorean journal for food science of animal resources · 2018
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Irene Garcia-FerrerProteolysis Lab, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Spanish Research Council (CSIC), 08028 Barcelona, Spain;
Pedro ArêdeProteolysis Lab, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Spanish Research Council (CSIC), 08028 Barcelona, Spain;
Josué Gómez-BlancoDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain;
Daniel LuqueDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain; Spanish National Microbiology Centre, Institute of Health Carlos III, 28220 Madrid, Spain;
Stephane DuquerroyUnité de Virologie Structurale, Département de Virologie and CNRS Unité de Recherche Associée 3015, Institut Pasteur, 75724 Paris Cedex 15, France; Departement de Biologie, Faculté des Sciences d'Orsay, Université Paris-Sud, 91405 Orsay, France.
José R CastónDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain;
Theodoros GoulasProteolysis Lab, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Spanish Research Council (CSIC), 08028 Barcelona, Spain; thgcri@ibmb.csic.es xgrcri@ibmb.csic.es.
F Xavier Gomis-RüthProteolysis Lab, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Spanish Research Council (CSIC), 08028 Barcelona, Spain; thgcri@ibmb.csic.es xgrcri@ibmb.csic.es.
Institut de Biologia Molecular de Barcelona · ESCentro Nacional de Biotecnología · ESInstituto de Salud Carlos III · ESInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The survival of commensal bacteria requires them to evade host peptidases. Gram-negative bacteria from the human gut microbiome encode a relative of the human endopeptidase inhibitor, α2-macroglobulin (α2M). Escherichia coli α2M (ECAM) is a ∼ 180-kDa multidomain membrane-anchored pan-peptidase inhibitor, which is cleaved by host endopeptidases in an accessible bait region. Structural studies by electron microscopy and crystallography reveal that this cleavage causes major structural rearrangement of more than half the 13-domain structure from a native to a compact induced form. It also exposes a reactive thioester bond, which covalently traps the peptidase. Subsequently, peptidase-laden ECAM is shed from the membrane and may dimerize. Trapped peptidases are still active except against very large substrates, so inhibition potentially prevents damage of large cell envelope components, but not host digestion. Mechanistically, these results document a novel monomeric "snap trap."

Indexed as

alpha-MacroglobulinsAmino Acid SequenceBinding SitesCrystallography, X-RayEndopeptidasesEscherichia coliEscherichia coli ProteinsGastrointestinal TractHumansMembrane ProteinsMicrobiotaMicroscopy, ElectronModels, MolecularMolecular Sequence DataMolecular WeightPeptide Hydrolasesalpha-MacroglobulinsEndopeptidasesEscherichia coli ProteinsMembrane ProteinsPeptide HydrolasesProtease Inhibitorsconformational rearrangementcryo-electron microscopygut microbiomeprotein inhibitorX-ray crystal structure

Identifiers

PMID26100869
PMCPMC4500212
OpenAlexW1682131851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.