Evidence map›Paper›PMID 26100695›Full record

ArticleAntimicrobial agents and chemotherapy2015

Mutations in genes for the F420 biosynthetic pathway and a nitroreductase enzyme are the primary resistance determinants in spontaneous in vitro-selected PA-824-resistant mutants of Mycobacterium tuberculosis.

Hana L Haver, Adeline Chua, Pramila Ghode, Suresh B Lakshminarayana, Amit Singhal, Barun Mathema, René Wintjens, Pablo Bifani

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 141 citations in OpenAlex.

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  19. Widespread loss-of-function mutations implicating preexisting resistance to new or repurposed anti-tuberculosis drugs.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2024
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Hana L HaverNovartis Institute for Tropical Diseases, Singapore Department of Microbiology and Immunology Program, Yong Loo Lin School of Medicine, Life Sciences Institute, National University of Singapore, Singapore.
Adeline ChuaNovartis Institute for Tropical Diseases, Singapore.
Pramila GhodeNovartis Institute for Tropical Diseases, Singapore Department of Biological Sciences, Faculty of Science, National University of Singapore, Singapore.
Suresh B LakshminarayanaNovartis Institute for Tropical Diseases, Singapore.
Amit SinghalSingapore Immunology Network (SIgN), A*STAR, Singapore.
Barun MathemaDepartment of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York, USA.
René WintjensLaboratory of Biopolymers and Supramolecular Nanomaterials (CP206/04), Université Libre de Bruxelles, Brussels, Belgium.
Pablo BifaniNovartis Institute for Tropical Diseases, Singapore pablo.bifani@novartis.com.
Novartis (Singapore) · SGNational University of Singapore · SGColumbia University · USSingapore Immunology Network · SGUniversité Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alleviating the burden of tuberculosis (TB) requires an understanding of the genetic basis that determines the emergence of drug-resistant mutants. PA-824 (pretomanid) is a bicyclic nitroimidazole class compound presently undergoing the phase III STAND clinical trial, despite lacking identifiable genetic markers for drug-specific resistant Mycobacterium tuberculosis. In the present study, we aimed to characterize the genetic polymorphisms of spontaneously generated PA-824-resistant mutant strains by surveying drug metabolism genes for potential mutations. Of the 183 independently selected PA-824-resistant M. tuberculosis mutants, 83% harbored a single mutation in one of five nonessential genes associated with either PA-824 prodrug activation (ddn, 29%; fgd1, 7%) or the tangential F420 biosynthetic pathway (fbiA, 19%; fbiB, 2%; fbiC, 26%). Crystal structure analysis indicated that identified mutations were specifically located within the protein catalytic domain that would hinder the activity of the enzymes required for prodrug activation. This systematic analysis conducted of genotypes resistant to PA-824 may contribute to future efforts in monitoring clinical strain susceptibility with this new drug therapy.

Indexed as

Antitubercular AgentsBacterial ProteinsDrug Resistance, BacterialMutationMycobacterium tuberculosisNitroimidazolesNitroreductasesPolymorphism, GeneticProtein Structure, SecondaryAntitubercular AgentsBacterial ProteinsNitroimidazolesNitroreductasespretomanid

Identifiers

PMID26100695
PMCPMC4538556
OpenAlexW2135131748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.