Evidence map›Paper›PMID 26100672›Full record

ArticleCancer research2015

CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus.

Mike R Russell, Annalise Penikis, Derek A Oldridge, Juan R Alvarez-Dominguez, Lee McDaniel, Maura Diamond, Olivia Padovan, Pichai Raman, Yimei Li, Jun S Wei and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed, 3 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 3 syntheses or guidelines pooled it, 181 citations in OpenAlex.

  1. Pooled it
  2. Evaluation of Genetic Predisposition for MYCN-Amplified Neuroblastoma.Journal of the National Cancer Institute · 2017
    Pooled it
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50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Mike R RussellDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Annalise PenikisDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Derek A OldridgeDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Juan R Alvarez-DominguezWhitehead Institute for Biomedical Research, Massachusetts Institute of Technology, Cambridge, Massachusetts. Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts.
Lee McDanielDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Maura DiamondDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Olivia PadovanDepartment of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania.
Pichai RamanDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Center for Biomedical Informatics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Yimei LiDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Jun S WeiOncogenomics Section, Genetics Branch, Center for Cancer Research, NCI, Bethesda, Maryland.
Shile ZhangOncogenomics Section, Genetics Branch, Center for Cancer Research, NCI, Bethesda, Maryland.
Janahan GnanchandranDepartment of Pediatrics, Division of Hematology-Oncology, Children's Hospital Los Angeles and Saban Research Institute, University of Southern California, Los Angeles, California.
Robert SeegerDepartment of Pediatrics, Division of Hematology-Oncology, Children's Hospital Los Angeles and Saban Research Institute, University of Southern California, Los Angeles, California.
Shahab AsgharzadehDepartment of Pediatrics, Division of Hematology-Oncology, Children's Hospital Los Angeles and Saban Research Institute, University of Southern California, Los Angeles, California.
Javed KhanOncogenomics Section, Genetics Branch, Center for Cancer Research, NCI, Bethesda, Maryland.
Sharon J DiskinDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Department of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania. The Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.
John M MarisDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Department of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania. The Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.
Kristina A ColeDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Department of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania. The Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania. colek@email.chop.edu.
Children's Hospital of Philadelphia · USCancer Genetics (United States) · USChildren's Hospital of Los Angeles · USUniversity of Pennsylvania · USWhitehead Institute for Biomedical Research · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
Therapy Resistance Mechanisms for CancerZIABC010998 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KHAN, JAVED · 2009 to 2025
$14.5M
Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
The Genetic Basis of Neuroblastoma TumorigenesisR01CA124709 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI MARIS, JOHN M · 2008 to 2017
$6.3M
Translational Genomics of MicroRNAs in NeuroblastomaK08CA136979 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI COLE, KRISTINA ANN · 2009 to 2013
$798k
Investigating non-coding mechanisms of functional dysregulation in neuroblastomaF30CA192831 · NCI · UNIVERSITY OF PENNSYLVANIA · PI OLDRIDGE, DEREK · 2015 to 2016
$57k
NCI NIH HHS F30 CA192831NCI NIH HHS K08 CA136979NCI NIH HHS K08CA136979NCI NIH HHS P30 CA016520NCI NIH HHS R01 CA124709NCI NIH HHS U10 CA098543NCI NIH HHS U10-CA98543NHGRI NIH HHS T32 HG000046
6 · The paper itself

Abstract

Chromosome 6p22 was identified recently as a neuroblastoma susceptibility locus, but its mechanistic contributions to tumorigenesis are as yet undefined. Here we report that the most highly significant single-nucleotide polymorphism (SNP) associations reside within CASC15, a long noncoding RNA that we define as a tumor suppressor at 6p22. Low-level expression of a short CASC15 isoform (CASC15-S) associated highly with advanced neuroblastoma and poor patient survival. In human neuroblastoma cells, attenuating CASC15-S increased cellular growth and migratory capacity. Gene expression analysis revealed downregulation of neuroblastoma-specific markers in cells with attenuated CASC15-S, with concomitant increases in cell adhesion and extracellular matrix transcripts. Altogether, our results point to CASC15-S as a mediator of neural growth and differentiation, which impacts neuroblastoma initiation and progression.

Indexed as

Genes, Tumor SuppressorPolymorphism, Single NucleotideCell DifferentiationCell Line, TumorChromosomes, Human, Pair 6Gene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansNeuroblastomaReproducibility of ResultsRNA, Long NoncodingRNA, Long Noncoding

Identifiers

PMID26100672
PMCPMC4526355
OpenAlexW1859714693

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.