Evidence map›Paper›PMID 26100633›Full record

ArticleThe Journal of biological chemistry2015

Transcriptional Regulation of the Sodium-activated Potassium Channel SLICK (KCNT2) Promoter by Nuclear Factor-κB.

Danielle L Tomasello, Amy M Gancarz-Kausch, David M Dietz, Arin Bhattacharjee

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Increased Expression of KNeurochemical research · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Danielle L TomaselloFrom the Program in Neuroscience and.
Amy M Gancarz-KauschDepartment of Pharmacology and Toxicology, The State University of New York at Buffalo, Buffalo, New York 14214.
David M DietzFrom the Program in Neuroscience and Department of Pharmacology and Toxicology, The State University of New York at Buffalo, Buffalo, New York 14214.
Arin BhattacharjeeFrom the Program in Neuroscience and Department of Pharmacology and Toxicology, The State University of New York at Buffalo, Buffalo, New York 14214 ab68@buffalo.edu.
University at Buffalo, State University of New York · US

Funding

Ionic Mechanisms Underlying Dorsal Root Ganglion ExcitabilityR01NS078184 · NINDS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI BHATTACHARJEE, ARINDAM · 2012 to 2016
$1.8M
NINDS NIH HHS NS078184NINDS NIH HHS R01 NS078184
6 · The paper itself

Abstract

Although recent studies have shown the sodium-activated potassium channel SLACK (KCNT1) can contribute to neuronal excitability, there remains little information on the physiological role of the closely related SLICK (KCNT2) channel. Activation of SLICK channels may be important during pathological states such as ischemia, in which an increase in intracellular sodium and chloride can perturb membrane potential and ion homeostasis. We have identified two NFκB-binding sites within the promoter region of the human SLICK (KCNT2) and orthologous rat Slick (Kcnt2) genes, suggesting that conditions in which NFκB transcriptional activity is elevated promote expression of this channel. NFκB binding to the rat Slick promoter was confirmed in vivo by ChIP analyses, and NFκB was found differentially bound to the two sites. We verified NFκB transcriptional regulation of SLICK/Slick by mutational analyses and studying gene expression by luciferase assay in P19 cells, where NFκB is constitutively active. For the rat gene, activation of the Slick promoter was found to be additive in single NFκB mutations and synergistic in double mutations. Unexpectedly, for the human gene, NFκB exhibited cooperativity in activating the SLICK promoter. The human SLICK promoter constructs were then tested under hypoxic conditions in PC-12 cells, where NFκB is not active. Only under hypoxic conditions could luciferase activity be detected; the double NFκB mutant construct failed to exhibit activity. Transcriptional regulation of Slick by NFκB was verified in primary neurons. The Slick transcript decreased 24 h after NFκB inhibition. Our data show SLICK expression is predominantly under the control of NFκB. Because neuronal NFκB activation occurs during stressful stimuli such as hypoxia and injury, our findings suggest that SLICK is a neuroprotective gene.

Indexed as

Transcription, GeneticAnimalsCell HypoxiaGanglia, SpinalGene Expression RegulationHumansNeuronsNF-kappa BPC12 CellsPotassium ChannelsPotassium Channels, Sodium-ActivatedPromoter Regions, GeneticRatsSignal TransductionSodiumKcnt2 potassium channel, ratNF-kappa BPotassium ChannelsPotassium Channels, Sodium-ActivatedSodiumhypoxiamolecular evolutionneurobiologyNFκBpotassium channel

Identifiers

PMID26100633
PMCPMC4513116
OpenAlexW1487977473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.